TABLE 4.
Summary of differential and non-differentially expressed genes related to ovarian development in transcriptome of female E. sinensis.
| Functional category | Gene Id | Gene Name | Tissue | Log2FC | ||
|---|---|---|---|---|---|---|
| Stage II vs. stage I | Stage III vs. stage I | Stage III vs. stage II | ||||
| Oogenesis | ||||||
| evm.model.scaffold215269.3 | Ubiquitin carboxyl-terminal hydrolase isozyme L5 | O | 0.2746 | 0.5305 a | 0.2607 | |
| evm.model.scaffold189079.103 | Ubiquitin domain-containing protein 2 | O | 0.4189 a | 1.1603 a | 0.7468 a | |
| evm.model.scaffold101611.10 | Ubiquitin thioesterase OTUB1 | O | −0.8314 a | −1.0975 a | −0.2624 | |
| evm.model.scaffold5121.29 | Ubiquitin−40 S ribosomal protein S27a | O | −0.3673 a | −0.1518 | 0.2204 | |
| evm.model.scaffold285327.23 | Ubiquitin-conjugating enzyme E2 1 | O | 0.1338 | 0.4183 a | 0.2894 | |
| evm.model.scaffold167741.10 | Ubiquitin-fold modifier 1 | O | 0.1310 | 0.4218 a | 0.2954 | |
| evm.model.scaffold187765.38 | Ubiquitin-like protein 5 | O | −0.2982 | −1.2920 a | −0.9895 a | |
| evm.model.scaffold53153.8 | Ubiquitin-protein ligase E3A | O | −0.2168 | −0.5410 a | −0.3194 | |
| evm.model.scaffold122915.10.1 | E2 ubiquitin-conjugating enzyme UBE2O | O | −0.0534 | −0.5067 a | −0.4483 | |
| evm.model.scaffold208181.4.1 | E3 ubiquitin-protein ligase HUWE1 | O | −0.0098 | −0.5126 a | −0.4978 a | |
| evm.model.scaffold5267.13 | Receptor-type guanylate cyclase Gyc76C | O | 0.4804 a | 0.6851 a | 0.2100 | |
| evm.model.scaffold275455.7 | 26 S proteasome regulatory subunit 7 | O | −0.1340 | −0.4224 a | −0.2832 | |
| evm.model.scaffold286953.1 | Anaphase-promoting complex subunit 1 | O | −0.1821 | −0.7939 a | −0.6068 a | |
| evm.model.scaffold90979.2 | cAMP-dependent protein kinase type I regulatory subunit | O | 0.4616 | 0.5879 a | 0.1312 | |
| evm.model.scaffold114711.10 | Cell division cycle protein 20 homolog | O | 0.6218 a | 0.2949 | −0.3221 | |
| evm.model.scaffold220627.9 | cGMP-dependent protein kinase, isozyme 2 | O | −0.5055 a | −0.9111 a | −0.3996 | |
| evm.model.scaffold264115.32 | Cyclin-dependent kinase 12 | O | −0.2223 | −0.4166 a | −0.1891 | |
| evm.model.scaffold167741.6 | G2/mitotic-specific cyclin-B3 | O | 0.0303 | −0.4078 a | −0.4332 | |
| evm.model.scaffold241053.16 | Mitogen-activated protein kinase 15 | O | −0.4416 | −1.1020 a | −0.6553 | |
| evm.model.scaffold274591.3 | Mitogen-activated protein kinase kinase 15 | O | −0.2193 | −0.5793 a | −0.3549 | |
| evm.model.scaffold119553.2.1 | Protein phosphatase PP2A 55 kDa regulatory subunit | O | −0.2366 | −0.4263 a | −0.1849 | |
| evm.model.scaffold1193895.1 | E3 ubiquitin-protein ligase DTX4 | H | 0.8455 | 1.7048 a | 0.8544 | |
| evm.model.scaffold205235.1 | E3 ubiquitin-protein ligase TRIM9 | H | 1.5430 | 2.0905 a | 0.5424 | |
| evm.model.scaffold287175.2 | Ubiquitin-conjugating enzyme E2-17 kDa | H | 0.5980 | 1.3555 a | 0.7516 | |
| evm.model.scaffold286953.2 | Anaphase-promoting complex subunit 1 | H | 0.4634 | 7.3608 a | 6.8887 a | |
| Vitellogenesis | ||||||
| evm.model.scaffold1186140.1 | vitellogenin receptor | O | 0.1868 | 0.0315 | −0.1500 | |
| evm.model.scaffold243259.1 | Vitellogenin | O | −0.8125 | −0.6356 | 0.1771 | |
| evm.model.scaffold154169.14 | Vitelline membrane outer layer protein 1 homolog | O | 0.7667 a | 1.5412 a | 0.7805 | |
| evm.model.scaffold63979.5 | Bone morphogenetic protein 3 | O | −1.7986 a | −1.2749 a | 0.5292 | |
| evm.model.scaffold243259.1 | Vitellogenin | H | 3.5984 | 10.8090 a | 7.2030 a | |
| evm.model.scaffold154169.14 | Vitelline membrane outer layer protein 1 homolog | H | −1.3724 | −1.2893 a | 0.0789 | |
| Reproduction | ||||||
| evm.model.scaffold255843.16 | Estrogen sulfotransferase | O | 1.6016 a | 2.6699 a | 1.0744 | |
| evm.model.scaffold161675.26 | Ecdysone receptor | O | 0.1278 | 0.2139 | 0.0913 | |
| evm.model.scaffold276475.32 | Ecdysteroid-regulated 16 kDa protein | O | 0.4953 a | 1.3522 a | 0.8614 a | |
| evm.model.scaffold257363.9 | Hematopoietic prostaglandin D synthase | O | 0.5540 a | 0.9824 a | 0.4333 | |
| evm.model.scaffold295493.8 | Prostaglandin reductase 1 | O | 0.2928 | 0.5713 a | 0.2838 | |
| evm.model.scaffold179389.8 | 3-hydroxy-3-methylglutaryl-coenzyme A reductase | O | 0.3026 | 0.1756 | 0.1222 | |
| evm.model.scaffold79457.3 | Juvenile hormone acid O-methyltransferase | O | −0.5923 | −0.0881 | 0.5134 | |
| evm.model.scaffold214315.5 | Mevalonate kinase | O | −0.1610 | −0.4895 a | −0.3240 | |
| evm.model.scaffold108751.5 | Hydroxysteroid dehydrogenase-like protein 2 | O | −0.0682 | −0.4897 a | −0.4164 | |
| evm.model.scaffold99181.11 | Insulin receptor | O | 0.6917 a | 1.1534 a | 0.4668 | |
| evm.model.scaffold188197.2 | Lutropin-choriogonadotropic hormone receptor | O | −0.2798 | −1.6597 a | −1.3748 a | |
| evm.model.scaffold282875.53 | Molt-inhibiting hormone-like (Fragment) | O | −1.3780 | −2.8396 a | −1.4577 | |
| evm.model.scaffold293791.21 | Octopamine receptor beta-3R | O | −0.0333 | 0.7277 a | 0.7661 | |
| evm.model.scaffold255843.16 | Estrogen sulfotransferase | H | 3.6768 a | 0.9734 | −2.7076 | |
| evm.model.scaffold92161.21 | Estradiol 17-beta-dehydrogenase 8 | H | 0.9808 | 1.1343 a | 0.1515 | |
| evm.model.scaffold161675.26 | Ecdysone receptor | H | 0.5430 | 0.5240 | -0.0213 | |
| evm.model.scaffold286593.11 | Prostaglandin G/H synthase 2 | H | 0.1519 | −2.4455 a | −2.6068 | |
| evm.model.scaffold136635.4 | Prostaglandin reductase 1 | H | −1.2971 | 2.1285 | 3.4198 a | |
| evm.model.scaffold179389.8 | 3-hydroxy-3-methylglutaryl-coenzyme A reductase | H | −0.0988 | 0.4337 | 0.5285 | |
Log2FC, Log2 Fold changes; O, Ovary; H, Hepatopancreas.
a
indicates significant differences among different development stages (p < 0.05).