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. 2022 Jun 7;194(10):4867–4891. doi: 10.1007/s12010-022-04006-3

Table 2.

ZINC small molecules screened based on phytochemical pharmacophores

Phytochemical Small molecules based on phytochemical pharmacophores
Analogues (ZINC id) Chemical name of the analogues RMSD (Å) Mass
Coronarin E (CID 9,971,144) ZINC43742965 [(2R,4aR,5R,8aS)-1,1,4a-trimethyl-6-methylidene-5-[(2-oxochromen-7-yl)oxymethyl]-3,4,5,7,8,8a-hexahydro-2H-naphthalen-2-yl] acetate (polyanthin) 0.235 425
ZINC12231395 8-(3,5-dimethylpyrazol-1-yl)-3,7-dimethyl-1-(2-phenylethyl)purine-2,6-dione 0.630 378
ZINC09794889 (2S)-N-benzhydryl-2-[[4-(2-fluorophenyl)-1,2,4-triazol-3-yl]sulfanyl]propanamide 0.683 433
n-Hexadecanoic acid (PCID 985) ZINC13368240 2-(4-fluorophenoxy)-N-[4-[[2-(2-methylpropyl)-5-oxo-[1,3,4]thiadiazolo[3,2-a]pyrimidin-7-yl]methoxy]phenyl]acetamide 0.675 483
ZINC13368607 2-(3,4-dimethylphenoxy)-N-[4-[(5-oxo-2-propyl-[1,3,4]thiadiazolo[3,2-a]pyrimidin-7-yl)methoxy]phenyl]acetamide 0.715 479
ZINC08603481 (E)-2-cyano-N-(4-fluorophenyl)-3-[4-[(2-methyl-5-oxo-[1,3,4]thiadiazolo[3,2-a]pyrimidin-7-yl)methoxy]phenyl]prop-2-enamide) 0.544 461
Phytosphingosine (CID 122,121) ZINC08781724 (5S)-N'-[3-chloro-5-(trifluoromethyl)pyridin-2-yl]-N'-methyl-3-[(3S)-3-methyl-5-oxo-1-phenyl-1,2,4-triazolidin-3-yl]-4,5-dihydro-1,2-oxazole-5-carbohydrazide) 0.511 498
ZINC08964497 Ethyl (3S)-3-[(4aR,6aS,6bS,7aR)-2-acetoxy-4a,6a-dimethyl-1,2,3,4,4a,4b,5,6,6a,7a,8,8a,8b,9-tetradecahydro-6bH-naphtho[2',1':4,5]indeno[1,2-b]oxiren-6b-yl]-3-hydroxybutanoate 0.606 461
ZINC59385771 (4S)-4-(2,4-dihydroxyphenyl)-N'-{(E)-[4-(dimethylamino)phenyl]methylene}-6-methyl-2-oxo-1,2,3,4-tetrahydro-5-pyrimidinecarbohydrazide 0.536 409
Rhein (CID 10,168) ZINC03875972 1,4-dihydroxy-9,10-dioxoanthracene-2-sulfonic acid (rufianic acid) 0.435 319
ZINC03977762 4,5,7-trihydroxy-9,10-dioxoanthracene-2-carboxylic acid (emodic acid) 0.044 299
ZINC34053106 5-acetyloxy-4-hydroxy-9,10-dioxoanthracene-2-carboxylic acid 0.044 325