Table 2.
ZINC small molecules screened based on phytochemical pharmacophores
| Phytochemical | Small molecules based on phytochemical pharmacophores | |||
|---|---|---|---|---|
| Analogues (ZINC id) | Chemical name of the analogues | RMSD (Å) | Mass | |
| Coronarin E (CID 9,971,144) | ZINC43742965 | [(2R,4aR,5R,8aS)-1,1,4a-trimethyl-6-methylidene-5-[(2-oxochromen-7-yl)oxymethyl]-3,4,5,7,8,8a-hexahydro-2H-naphthalen-2-yl] acetate (polyanthin) | 0.235 | 425 |
| ZINC12231395 | 8-(3,5-dimethylpyrazol-1-yl)-3,7-dimethyl-1-(2-phenylethyl)purine-2,6-dione | 0.630 | 378 | |
| ZINC09794889 | (2S)-N-benzhydryl-2-[[4-(2-fluorophenyl)-1,2,4-triazol-3-yl]sulfanyl]propanamide | 0.683 | 433 | |
| n-Hexadecanoic acid (PCID 985) | ZINC13368240 | 2-(4-fluorophenoxy)-N-[4-[[2-(2-methylpropyl)-5-oxo-[1,3,4]thiadiazolo[3,2-a]pyrimidin-7-yl]methoxy]phenyl]acetamide | 0.675 | 483 |
| ZINC13368607 | 2-(3,4-dimethylphenoxy)-N-[4-[(5-oxo-2-propyl-[1,3,4]thiadiazolo[3,2-a]pyrimidin-7-yl)methoxy]phenyl]acetamide | 0.715 | 479 | |
| ZINC08603481 | (E)-2-cyano-N-(4-fluorophenyl)-3-[4-[(2-methyl-5-oxo-[1,3,4]thiadiazolo[3,2-a]pyrimidin-7-yl)methoxy]phenyl]prop-2-enamide) | 0.544 | 461 | |
| Phytosphingosine (CID 122,121) | ZINC08781724 | (5S)-N'-[3-chloro-5-(trifluoromethyl)pyridin-2-yl]-N'-methyl-3-[(3S)-3-methyl-5-oxo-1-phenyl-1,2,4-triazolidin-3-yl]-4,5-dihydro-1,2-oxazole-5-carbohydrazide) | 0.511 | 498 |
| ZINC08964497 | Ethyl (3S)-3-[(4aR,6aS,6bS,7aR)-2-acetoxy-4a,6a-dimethyl-1,2,3,4,4a,4b,5,6,6a,7a,8,8a,8b,9-tetradecahydro-6bH-naphtho[2',1':4,5]indeno[1,2-b]oxiren-6b-yl]-3-hydroxybutanoate | 0.606 | 461 | |
| ZINC59385771 | (4S)-4-(2,4-dihydroxyphenyl)-N'-{(E)-[4-(dimethylamino)phenyl]methylene}-6-methyl-2-oxo-1,2,3,4-tetrahydro-5-pyrimidinecarbohydrazide | 0.536 | 409 | |
| Rhein (CID 10,168) | ZINC03875972 | 1,4-dihydroxy-9,10-dioxoanthracene-2-sulfonic acid (rufianic acid) | 0.435 | 319 |
| ZINC03977762 | 4,5,7-trihydroxy-9,10-dioxoanthracene-2-carboxylic acid (emodic acid) | 0.044 | 299 | |
| ZINC34053106 | 5-acetyloxy-4-hydroxy-9,10-dioxoanthracene-2-carboxylic acid | 0.044 | 325 | |