Table 2.
AMR genotypes of 385 isolates as identified by APHA Seqfinder. Total count of isolates containing the genotype is shown alongside the ST most frequently associated with the genotype and fraction (in percentage) of isolates possessing the AMR genotype derived from this ST. Only genotypes with counts >3 isolates are shown
|
AMR Genotype |
Count |
ST (%) |
|---|---|---|
|
aadA5, aph3-Ia, strA, strB, bla TEM-1b , int1, mphA, sul1, sul2, tetAB, dfrA17, gyrA, parC |
28 |
744 (100) |
|
aadA5, strA, strB, bla TEM-1b , int1, mphA, sul1, sul2, tetAB, dfrA17, gyrA, parC |
28 |
744 (100) |
|
aph3-Ia, strA, strB, sul2, tetAB |
20 |
88 (100) |
|
gyrA, parC |
20 |
44 (90) |
|
aadA2, ant3-Ia, cmlA1, int1, sul3_v1, tetA, dfrA12, gyrA, parC |
16 |
44 (100) |
|
tetA(B) |
13 |
10 (35) |
|
aadA5, strA, strB, bla TEM-1b , catA1, int1, mphA, sul1, sul2, tetA(B), dfrA17, gyrA, parC |
11 |
744 (100) |
|
tetA |
10 |
10 (50) |
|
bla CTX-M-15 , bla TEM-1b , qnrS1, tet(A), dfrA14 |
9 |
58 (100) |
|
ant3-1a, sat2A |
8 |
10 (75) |
|
aph3-Ia, strA, strB, bla TEM-1b , sul2, tetAB, gyrA, parC |
7 |
744 (100) |
|
aadA5, aph3-Ia, strA, strB, bla TEM-1b , catA1, int1, mphA, sul1, sul2, tet(A)B, tetA, dfrA17, floR, gyrA, parC |
7 |
744 (100) |
|
sul2 |
6 |
88 (100) |
|
strA, strB, tetA(B) |
5 |
10 (40) |
|
aadA5, aph3-Ia, strA, strB, bla TEM-1b , catA1, int1, mphA, sul1, sul2, tetAB, dfrA17, gyrA, parC |
5 |
744 (100) |
|
aadA2, ant3-Ia, cmlA1, int1, sul3_v1, dfrA12, gyrA, parC |
5 |
44 (80) |
|
aph3-Ia, strA, strB, bla TEM-1b , catA1, int1, sul2, tetA(B), gyrA, parC |
4 |
744 (100) |
|
strA, strB, bla TEM-1b , catA1, int1, sul2, tetAB, dfrA17, gyrA, parC |
3 |
117 (100) |
|
strA, strB, bla CTX-M-3 , tetA(B) |
3 |
48 (100) |
|
bla CTX-M-1 , sul2, tetA |
3 |
2721 (100) |
|
ant3-Ia, int1, sul1, tetA, dfrA1 |
3 |
744 (100) |
|
strA, strB, bla TEM-1b , sul2, tetA(B), gyrA, parC |
3 |
744 (100) |
|
aph3-Ia, strB, bla TEM-1b , sul2, tetA(B), gyrA, parC |
3 |
744 (100) |