Table 4.
ST 744 isolates belonging to the CG-1 clonal group (reference isolate F1T1-M11) alongside SNP differences in comparison to reference isolate, isolate source and AMR genotype
|
Source |
Isolate ID |
SNPs |
AMR Gene Pattern |
|---|---|---|---|
|
Dry |
F1T1-M11 |
n/a |
aadA5, aph3-Ia, strA, strB, bla TEM-1b , int1, mphA, sul1, sul2, tetA(B), dfrA17, gyrA, parC |
|
Gilts |
F1T1-M9 |
2 |
aadA5, strA, strB, bla TEM-1b , int1, mphA, sul1, sul2, tetA(B), dfrA17, gyrA, parC |
|
Growers |
F1T1-WGS46 |
3 |
aadA5, aph3-Ia, strA, strB, bla TEM-1b, int1, mphA, sul1, sul2, tetAB, dfrA17, gyrA, parC |
|
Dry |
F1T1-WGS83 |
8 |
|
|
Dry |
F1T1-WGS88 |
4 |
|
|
Dry |
F1T1-WGS91 |
4 |
|
|
Farrowing |
F1T2-S57 |
3 |
|
|
Dry |
F1T2-S66 |
1 |
|
|
Dry |
F1T2-S67 |
2 |
|
|
Gull |
F1T3-S132 |
9 |
|
|
Gilts |
F1T3-S61 |
3 |
|
|
Gilts |
F1T3-S67 |
3 |
|
|
Gilts |
F1T3-S69 |
4 |
|
|
Gilts |
F1T3-S71 |
4 |
aadA5, aph3-Ia, int1, mphA, sul1, tetAB, dfrA17, gyrA, parC |
|
Gilts |
F1T3-S72 |
5 |
aadA5, aph3-Ia, strA, strB, bla TEM-1b, int1, mphA, sul1, sul2, tetAB, dfrA17, gyrA, parC |
|
Gilts |
F1T3-S73 |
6 |
|
|
Gilts |
F1T3-S77 |
5 |
|
|
Dry |
F1T3-S80 |
5 |
|
|
Dry |
F1T3-S81 |
7 |
|
|
Dry |
F1T3-S82 |
6 |
|
|
Dry |
F1T3-S83 |
4 |
|
|
Dry |
F1T3-S84 |
7 |
|
|
Dry |
F1T3-S88 |
8 |
|
|
Dry |
F1T3-S89 |
7 |
|
|
Dry |
F1T3-S95 |
5 |