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. 2022 Mar 18;8(3):000785. doi: 10.1099/mgen.0.000785

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© 2022 The Authors

This is an open-access article distributed under the terms of the Creative Commons Attribution License. This article was made open access via a Publish and Read agreement between the Microbiology Society and the corresponding author’s institution.

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Fig. 3. — Phylogenetic tree showing presence and absence of AMR-associated genes of S. Enteritidis within the West African clade. The tree was built by applying maximum-likelihood phylogenetic reconstruction implemented by IQ-TREE followed by mid-point rooting. Each branch is labelled with either isolate name (this study) or accession number (reference strains), followed by country of isolation. Presence (filled squares) or absence (empty squares) of AMR genes and plasmid replicons are displayed for each isolate. Bar, 0.001 maximum-likelihood genetic distance estimated by IQ-TREE.