Figure 3.

Time required to run sim_mutations on tree sequences generated by sim_ancestry (with a population size of 10⁴ and recombination rate of ${10}^{-8}$) for varying (haploid) sample size and sequence length. We ran 10 replicate mutation simulations each for three different mutation rates, and report the average CPU time required (Intel Core i7-9700). (A) Holding sequence length fixed at 10 megabases and varying the number of samples (tree tips) from 10 to 100,000. (B) Holding number of samples fixed at 1000, and varying the sequence length from 1 to 100 megabases.