Table 3.

The integrity of 6 separate regions relative to the corresponding sections of reference

Number	Locus	Provirus regions	5′LTR (%)	gag (%)	pro (%)	pol (%)	env (%)	3′LTR (%)
1	16p12.3	chr16 19393581 19402152	100.00	99.83	99.89	99.39	99.17	99.66
2	2p12	chr2 82022660 82031279	98.98	99.72	99.89	99.43	99.90	99.15
3	15q21.1	chr15 45234477 45243073	99.83	99.27	100.00	99.66	99.56	99.83
4	8p11.1	chr8 43694016 43702583	99.83	99.44	98.31	99.39	99.66	99.83
5	13q31.1	chr13 84869526 84877320	35.78	99.55	52.20	99.77	99.80	99.32
6	4q33	chr4 170126345 170133883	99.66	99.89	99.77	99.70	13.93	0.00
7	6p12.3	chr6 48873675 48879725	99.15	92.79	65.84	6.13	99.85	99.66
8	Yp11.2	chrY 9273707 9279611	88.42	90.73	63.81	6.36	98.83	99.49
9	8q24.3	chr8 145019974 145032719	0.00	0.00	0.79	99.77	99.90	95.23
10	Yq11.223	chrY 21580120 21585551	88.25	91.74	64.83	6.25	99.36	15.84
11	19q13.2	chr19 40954172 40959178	98.98	98.94	64.26	6.17	67.40	77.51
12	Yp11.2	chrY 8121821 8126768	99.66	76.49	14.09	6.40	99.17	98.81
13	Yp11.2	chrY 8996062 9000755	0.00	80.23	64.37	6.47	99.80	95.55
14	Yq11.222	chrY 18622534 18626952	96.76	75.21	0.00	0.00	84.75	98.47
15	Yq11.223	chrY 21845475 21850069	0.00	70.85	64.60	6.40	99.32	99.15
16	21q21.1	chr21 18563368 18566735	0.00	0.00	95.26	96.12	0.00	0.00
17	5q33.3	chr5 156660448 156663815	0.00	0.00	95.26	96.12	0.00	0.00
18	1q22	chr1 155629408 155632775	0.00	0.00	95.26	96.12	0.00	0.00
19	7q36.1	chr7 150561277 150563994	0.00	0.00	0.00	16.91	99.02	54.51
20	8q21.13	chr8 78652302 78654820	0.00	0.00	0.00	0.00	87.34	100.00
21	10q24.2	chr10 99822511 99825532	0.00	0.00	52.29	95.43	0.00	0.00
22	12q13.11	chr12 48509228 48511681	0.00	0.00	88.72	63.52	0.00	0.00
23	Yq11.222	chrY 17669948 17671523	52.81	62.09	0.00	0.00	0.00	0.00