Table 1. Cell type annotations and the gene marker(s) of each type used in Fig. 1 .
Cell type annotations | Cluster number | Gene markers |
B cells | 23 | IGHM, JCHAIN, MS4A1 |
Cycling cells | 14 | MKI67, TOP2A |
Dendritic cells | 17 | CD1C, CLEC9A, FSCN1 |
Epithelial cells | 20, 22 | EPCAM, KRT18, MUC16 |
Macrophages | 0–2, 4–5, 7, 9–12, 15–16, 21 | CD68, MRC1, MSR1 |
Mast cells | 24 | TPSB2 |
Natural killer cells | 18 | KLRF1, KLRD1, XCL1 |
T cells | 3, 6, 8, 13, 19 | CD3D |