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Neighbor joining (NJ) tree resulting from the cgMLST analysis performed on the 16 K. pneumoniae draft assemblies according to the Pasteur Institute’s scheme (629 loci). The tree is annotated with metadata (source and year of isolation), antimicrobial resistance gene (blue color indicates the presence), virulence score, virulence genes (red color indicates the presence), and plasmid (grey color indicates the presence). For novel sequence types we attributed the symbol “*”.
