TABLE 3.
List of the JCV types used in the phylogenetic analysisa
| Genotype | Strain no. | GenBank accession no. | Reference |
|---|---|---|---|
| Type 1 (Europe) | |||
| 1A | Mad-1 | JO227 | 17 |
| 1A | 124 | AFO15526 | 3 |
| 1B | 123 | AFO15227 | 4 |
| Type 2 (Asia) | |||
| 2A | Tokyo-1 | AFO30085 | 4 |
| 2A | 224 | AFO15529 | 4 |
| 2A | 225 | AFO15530 | 4 |
| 2A | 226 | AFO15531 | 4 |
| 2B | 223 | AFO15532 | 4 |
| 2B | 227 | AFO15533 | 4 |
| 2C | 228 | AFO15534 | 4 |
| 2C | 229 | AFO15535 | 4 |
| 2D | 230 | AFO15536 | 4 |
| Type 3 (Africa) | |||
| 3A | 308 | U73500 | 1 |
| 3A | 312 | U73502 | 1 |
| 3B | 311 | U73501 | 1 |
| Type 4 (European and African American) | 402 | AFO15528 | 2 |
| Type 5 (minor European) | 501 | AFO15684 | 4 |
| Type 6 (West Africa) | 601 | AFO15537 | Unpublished data |
| Type 7 (Southeast Asia) | Tai-3 | U61771 | 28 |
a
From the work of Jobes et al. (20).