Table 2. Binding energies and intermolecular forces in gabazine docking into LsRDLR homology models and the human α1β2γ2 GABAR cryo-EM structure.
| GABAR | Binding energy (kJ/mol) | Hydrogen bond | π–π Stacking |
|---|---|---|---|
| LsRDLR | |||
| WT | −38.4 | F166B, R71D, S136E | Y69D |
| Y69DF | −37.8 | S165B, F166B, S136E | F69D |
| F73DS | −39.0 | S165B, F166B, R71D | Y69D |
| F106AY | −36.3 | S165B, F166B, R71D | Y69D |
| Y69DF/F73DS | −36.2 | F166B, R126E | F69D |
| Y69DF/F106AY | −37.3 | F166B, R71D, R126E, S136E | F69D |
| F73DS/F106AY | −41.5 | F166B, R71D | Y69D |
| Y69DF/F73DS/F106AY | −40.2 | S165B, F166B, T211C, S136E | F69D |
| Human GABAR | |||
| α1β2γ2 GABAR cryo-EM | −47.3 | Y157βB, Y205βC, R67αD, R120αE | Y157βB, F65αD |
Superscript uppercase letters indicate loop names. Superscript Greek letters indicate subunit names.