Bacterial and virus strains |
|
T1 competent cells |
Shanghai Weidi Biotechnology Co, Ltd |
DL1015S |
|
Chemicals, peptides, and recombinant proteins |
|
Fetal bovine serum (FBS) |
Sigma, USA |
F2442 |
Pennicillin/Streptomycin solution |
Beyotime, China |
C0222 |
Trypsin-EDTA solution |
Sigma, USA |
T4049 |
Leukemia inhibitory factor (LIF) or ESGRO |
Millipore, USA |
ESG1107 |
T4 DNA ligase |
Takara, Japan |
2011A |
T4 polynucleotide kinase (PNK) (10 U/ μL) |
Takara, Japan |
2021S |
Bpil |
Thermo Scientific, USA |
FD1014 |
Gelatin |
Sinopharm Chemical Reagent (SCR), China |
9000-70-8 |
Bacto-yeast extract |
Sangon, China |
A515245-0500 |
Bacto-tryptone |
Sangon, China |
A505247-0500 |
Agar |
Macklin, China |
A800730 |
Lipofectamine 2000 |
Invitrogen, USA |
11668019 |
DMEM |
Invitrogen, USA |
C11995500CP |
Non-essential amino acid (NEAA) solution (100×) |
HyClone, USA |
SH30238.01 |
Dithiothreitol (DTT) |
Fisher Biotec, USA |
BP172-25 |
Dimethyl sulfoxide (DMSO) |
Amethyst, China |
966629 |
Carbenicillin |
YEASEN, China |
60202ES08 |
β-mercaptoethanol |
Sigma, USA |
M3148 |
84 disinfection solution (with sodium hypochlorite) |
Aitefu, China |
92651097 |
Sodium Chloride (NaCl) |
Sangon, China |
A501218-0001 |
PBS (20×) |
Sangon, China |
B548117-0500 |
Proteinase K |
Abcone, China |
P78893 |
Tris |
Beyotime Biotechnology, China |
ST761 |
SDS |
Sigma, USA |
L4390 |
Agarose |
Abcone, China |
A88490 |
GeneGreen nucleic acid dye |
TIANGEN, China |
RT210 |
EDTA |
Amethyst, China |
976151-500G |
EcoRV |
NEB, USA |
R0195S |
HindIII |
NEB, USA |
R0104S |
|
Critical commercial assays |
|
T7E1 assay |
Vazyme, China |
EN303-01 |
|
Experimental models: Mouse wild-type ES cell lines |
|
D1911 ES cell line (129/DBA hybrid background) |
Li Lab, ShanghaiTech |
(Lau et al., 2016) |
D1906 ES cell line (129/DBA hybrid background) |
Li Lab, ShanghaiTech |
(Lau et al., 2016) |
TC1 ES cell line (129 background) |
Leder Lab, Harvard |
(Deng et al., 1995) |
|
Oligonucleotides |
|
CACCGAATAGGAATTTGTGACGTCC |
GENEWIZ |
Zfp445-sgRNA1-top |
AAACGGACGTCACAAATTCCTATTC |
GENEWIZ |
Zfp445-sgRNA1-bottom |
CACCGAGCTCAGCGCAATCTTTATC |
GENEWIZ |
Zfp445-sgRNA2-top |
AAACGATAAAGATTGCGCTGAGCT |
GENEWIZ |
Zfp445-sgRNA2-bottom |
AGTGCGTCCTTCGTTACCTG |
GENEWIZ |
Zfp445-F1 |
GTGAAGGTAGCTGGGGATAC |
GENEWIZ |
Zfp445-R1 |
GAGGGCCTATTTCCCATGATTCCT |
GENEWIZ |
U6-Forward |
GGACCTACAAGCAAGCAGAC |
GENEWIZ |
Zfp445-F2 |
GTCACCGAGCTGCAAGAACT |
GENEWIZ |
Puro-F |
GCTCGTAGAAGGGGAGGTTG |
GENEWIZ |
Puro-R |
GGAAACAGCTATGACCATG |
GENEWIZ |
M13 Reverse Primer |
|
Recombinant DNA |
|
pX330 |
Addgene, USA |
42230 |
PGL3-U6-sgRNA-PGK-puromycin |
Youbio, China |
VT8203 |
pBluescript |
GenBank |
X52331.1 |
|
Other |
|
AxyPrep DNA Gel Extraction Kit |
Axygen of Corning |
35717KE1 |
AxyPrep Endo-Free Plasmid Midiprep Kit |
Axygen of Corning |
09318KA2 |
Advantage GC2 PCR Kit |
Takara, Japan |
639119 |
TA cloning with the pUCm-T vector |
Sangon, China |
B522213 |