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. 2022 Jun 10;12:12. doi: 10.1186/s13395-022-00297-6

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© The Author(s) 2022

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 1 — Adjusting image levels and mask editing. The upper panel shows the input, output and controls of the “Adjust levels” function. The lower panel shows the input, output and controls of the “Edit mask” function. The user first makes a rough mask (B) of the adjusted image (A) using regular thresholding. The rough mask is then edited using the editing functions to produce a mask ready for analysis (C)