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. 2000 Feb;66(2):700–711. doi: 10.1128/aem.66.2.700-711.2000

TABLE 2.

Closest relatives of bacterial phylotypes from O1 16S rRNA gene library

Division (% representation) Type sequence No. of RFLP typesa No. of total clonesb Closest cultivated species Source % Similarityc
Proteobacteria
 γ (35%) O1 1E2 1 1 Marinobacter hydrocarbonoclasticus Seawater 99.4
O1 6G1 3 11 Pseudomonas fluorescens Soil 99.3–99.6
O1 6A8 1 2 Pseudomonas putida Subsurface 99.6
O1 8F4 1 1 Pseudomonas aureofaciens Soil 99.1
O1 4B5 5 20 Halomonas variabilis Salt lake 98.5–99.6
O1 1D12 1 1 Halomonas pacifica Seawater 97.2
O1 8C4 3 7 Acinetobacter johnsonii Sewage 99.5–99.9
O1 1G12 1 2 Acinetobacter junii Urine 100
O1 8E12 1 4 Acinetobacter sp. Subsurface 98.9–99.3
 α (3%) O1 4D1 1 1 Sphingomonas yanoikuyae Soil 98.9
O1 4C5 1 2 Brevundimonas diminuta Soil 99.9
O1 8E10 1 1 Methylobacterium radiotolerans Lake water 100
 β (0.6%) O1 1E3 1 1 Not cultivated
 δ (1.2%) O1 1H2 1 2 Desulfomicrobium apsheronum Oil 91.6
Flavobacterium, Bacteroides, and Cytophaga (0.6%) O1 1D1 1 1 Flexibacter aurantiacus Soil 97.6
Low G+C, gram positive (42%) O1 8G7 3 40 Acidaminococcus fermentans Rumen 94.7
O1 1B1 13 18 Thermoanaerobacter brockii Oil 95.8
O1 1D9 1 1 Aminobacterium colombiense Sewage 87.1
O1 8G5 1 2 Desulfothiovibrio peptidovorans Oil 93.7
a

Number of unique RFLP patterns most closely related to the same cultivated species. 

b

Number of total related clones in SSU O1 library. 

c

16S rDNA E. coli numbering 519 to 1,390.