TABLE 2.
Division (% representation) | Type sequence | No. of RFLP typesa | No. of total clonesb | Closest cultivated species | Source | % Similarityc |
---|---|---|---|---|---|---|
Proteobacteria | ||||||
γ (35%) | O1 1E2 | 1 | 1 | Marinobacter hydrocarbonoclasticus | Seawater | 99.4 |
O1 6G1 | 3 | 11 | Pseudomonas fluorescens | Soil | 99.3–99.6 | |
O1 6A8 | 1 | 2 | Pseudomonas putida | Subsurface | 99.6 | |
O1 8F4 | 1 | 1 | Pseudomonas aureofaciens | Soil | 99.1 | |
O1 4B5 | 5 | 20 | Halomonas variabilis | Salt lake | 98.5–99.6 | |
O1 1D12 | 1 | 1 | Halomonas pacifica | Seawater | 97.2 | |
O1 8C4 | 3 | 7 | Acinetobacter johnsonii | Sewage | 99.5–99.9 | |
O1 1G12 | 1 | 2 | Acinetobacter junii | Urine | 100 | |
O1 8E12 | 1 | 4 | Acinetobacter sp. | Subsurface | 98.9–99.3 | |
α (3%) | O1 4D1 | 1 | 1 | Sphingomonas yanoikuyae | Soil | 98.9 |
O1 4C5 | 1 | 2 | Brevundimonas diminuta | Soil | 99.9 | |
O1 8E10 | 1 | 1 | Methylobacterium radiotolerans | Lake water | 100 | |
β (0.6%) | O1 1E3 | 1 | 1 | Not cultivated | ||
δ (1.2%) | O1 1H2 | 1 | 2 | Desulfomicrobium apsheronum | Oil | 91.6 |
Flavobacterium, Bacteroides, and Cytophaga (0.6%) | O1 1D1 | 1 | 1 | Flexibacter aurantiacus | Soil | 97.6 |
Low G+C, gram positive (42%) | O1 8G7 | 3 | 40 | Acidaminococcus fermentans | Rumen | 94.7 |
O1 1B1 | 13 | 18 | Thermoanaerobacter brockii | Oil | 95.8 | |
O1 1D9 | 1 | 1 | Aminobacterium colombiense | Sewage | 87.1 | |
O1 8G5 | 1 | 2 | Desulfothiovibrio peptidovorans | Oil | 93.7 |
Number of unique RFLP patterns most closely related to the same cultivated species.
Number of total related clones in SSU O1 library.
16S rDNA E. coli numbering 519 to 1,390.