Table 2.
Rmblast.pl output of the eight subfamilies produced by ClusterPartialMatchingSubs.pl analysis of example1.
| SW | divergence | % del | % ins | Query | Query start | Query end | A_left | Target | Target start | Target end | T_left |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 4920 | 0.88 | 0 | 0 | Cluster0 | 1 | 571 | 0 | Cluster0 | 1 | 571 | 0 |
| 2704 | 2.1 | 0.35 | 32.33 | Cluster0 | 1 | 571 | 0 | Cluster12 | 1 | 433 | 0 |
| 2009 | 11.88 | 2.21 | 3.06 | Cluster0 | 210 | 571 | 0 | Cluster8 | 132 | 490 | 0 |
| 4051 | 0.22 | 0 | 0 | Cluster10 | 1 | 465 | 0 | Cluster10 | 1 | 465 | 0 |
| 2941 | 10.54 | 7.1 | 0.2 | Cluster10 | 1 | 465 | 0 | Cluster7 | 2 | 498 | 0 |
| 2725 | 8.6 | 13.76 | 1.34 | Cluster10 | 1 | 465 | 0 | Cluster6 | 1 | 522 | 0 |
| 3822 | 0.23 | 0 | 0 | Cluster12 | 1 | 433 | 0 | Cluster12 | 1 | 433 | 0 |
| 2735 | 2.77 | 32.33 | 0.35 | Cluster12 | 1 | 433 | 0 | Cluster0 | 1 | 571 | 0 |
| 4579 | 0.19 | 0 | 0 | Cluster2 | 1 | 522 | 0 | Cluster2 | 1 | 522 | 0 |
| 3488 | 1.72 | 0 | 14.73 | Cluster2 | 1 | 522 | 0 | Cluster5 | 32 | 486 | 0 |
| 3076 | 4.62 | 1.93 | 14.5 | Cluster2 | 4 | 522 | 0 | Cluster8 | 29 | 490 | 0 |
| 4268 | 0.21 | 0 | 0 | Cluster5 | 1 | 486 | 0 | Cluster5 | 1 | 486 | 0 |
| 3503 | 5.56 | 2.06 | 1.85 | Cluster5 | 1 | 486 | 0 | Cluster8 | 4 | 490 | 0 |
| 3452 | 1.98 | 14.73 | 0 | Cluster5 | 32 | 486 | 0 | Cluster2 | 1 | 522 | 0 |
| 4562 | 0 | 0 | 0 | Cluster6 | 1 | 522 | 0 | Cluster6 | 1 | 522 | 0 |
| 2787 | 11.3 | 1.53 | 6.64 | Cluster6 | 1 | 522 | 0 | Cluster7 | 2 | 498 | 0 |
| 2734 | 7.66 | 1.34 | 13.76 | Cluster6 | 1 | 522 | 0 | Cluster10 | 1 | 465 | 0 |
| 4354 | 0 | 0 | 0 | Cluster7 | 1 | 498 | 0 | Cluster7 | 1 | 498 | 0 |
| 2941 | 9.86 | 0.2 | 7.1 | Cluster7 | 2 | 498 | 0 | Cluster10 | 1 | 465 | 0 |
| 2806 | 11.87 | 6.64 | 1.53 | Cluster7 | 2 | 498 | 0 | Cluster6 | 1 | 522 | 0 |
| 4346 | 0.41 | 0 | 0 | Cluster8 | 1 | 490 | 0 | Cluster8 | 1 | 490 | 0 |
| 3524 | 5.54 | 1.85 | 2.06 | Cluster8 | 4 | 490 | 0 | Cluster5 | 1 | 486 | 0 |
| 3045 | 5.19 | 14.5 | 1.93 | Cluster8 | 29 | 490 | 0 | Cluster2 | 4 | 522 | 0 |
| 2053 | 11.98 | 3.06 | 2.21 | Cluster8 | 132 | 490 | 0 | Cluster0 | 210 | 571 | 0 |
The bolded rows highlight the comparisons of the cluster2 consensus with other subfamily consensi. The red numbers highlight the differences between the 5′ edges between the bolded consensi in the row.
SW: Smith-Waterman score Divergence: percent divergence
% del: percent of deletions in the query sequence
% ins: percent of insertions in the query sequence Query: name of query sequence
Query start: starting position match in the query sequence Query end: ending position of match in the query sequence
Q_left: number of bases in query sequence past the ending position of match Target: name of target sequence
Target start: starting position match in the target sequence Target end: ending position of match in the target sequence
T_left: number of bases in target sequence past the ending position of match