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. 2022 May 30;13:854848. doi: 10.3389/fimmu.2022.854848
AUC area under the curve
C1orf106 chromosome 1 open reading frame 106
CADM clinically amyopathic dermatomyositis
CB2R cannabinoid type 2 receptor
ceRNA competing endogenous RNA
CHD3 chromodomain- helicase- DNA- binding protein 3
CIBERSORT cell type identification by estimating relative subsets of RNA transcripts
COG8 component of oligomeric Golgi complex 8
Cor correlation coefficient
CTLA-4 cytotoxic T-lymphocyte–associated protein 4
CXCR4 C-X-C motif chemokine receptor 4
DM dermatomyositis
EVPL envoplakin
ES enrichment score
FDR false-positive rate
GC germinal center
GEO Gene Expression Omnibus
GIMAPs GTPases of immunity-associated proteins
GIMAP6 GTPases of immunity-associated protein family member 6
GO Gene Ontology
GPL GEO platforms
GSEA Gene S e t Enrichment An a l y s i s
HIV-1 human immunodeficiency virus 1
IBD inflammatory bowel disease
IFI6 interferon-alpha inducible protein 6
IFIH1 interferon induced with helicase C domain 1
IFN interferon
IFN-I type I interferon
IL interleukin
ILD interstitial lung disease
IIMILD idiopathic inflammatory myopathy–related ILD
INAVA innate immunity activator
ISG interferon-stimulated gene
ISG15 interferon-stimulated gene 15
JAK/STAT Janus kinase/signal transducers and activators of transcription
JDM juvenile dermatomyositis
KEGG Kyoto Encyclopedia of Genes and Genomes
KIRC kidney renal clear cell carcinoma
LASSO least absolute shrinkage and selection operator
lncRNA long noncoding RNA
MAAs myositis-associated autoantibodies
MSAs myositis-specific autoantibodies
MAD5 melanoma differentiation–associated gene 5
ME module eigengene
MFI mean fluorescence intensity
MHC-II major histocompatibility complex class II
mRNA messenger RNA
miRNA microRNA
MIR21 microRNA 21
MM module membership
MS multiple sclerosis
NES normalized enrichment score
PBMCs peripheral blood mononuclear cells
RIG-I retinoic acid inducible-gene I
ROC curve receiver operating characteristic curve
PRR pattern recognition receptors
RP-ILD rapidly progressive interstitial lung disease
SLE systemic lupus erythematosus
SNPs single nucleotide polymorphisms
TFs transcription factors
Th T helper
TOM topological overlap matrix
TRIM33 tripartitemotif-containing 33
WGCNA weighted gene coexpression network analysis