Table 1.
Summary of simulations
Membrane | Peptides | Length (μs) | Replicates | Method |
---|---|---|---|---|
PC | 15 | 350 | 3 | WE |
PC:CHOL | 15 | 330 | 3 | WE |
PC | 0 | 0.6 | 3 | MD |
PC:CHOL | 0 | 0.6 | 3 | MD |
For the WE runs, the time refers to the total sampling time for each WE replicate. “Replicates” indicate the number of independently built trajectories that were run; three distinct WE simulations were performed for each composition. MD, standard molecular dynamics; WE, weighted ensemble.