Table 2.
Part | Symbol | Unit | Initial guess value | Source | Meaning |
---|---|---|---|---|---|
Actin filament | [μm] | 1.1 | (91) | length of actin (half) filament | |
ract | [nm] | 5.5 | (92) | radius of actin filament | |
[nm] | 5.5 | (91) | repetition of active sites | ||
[nm] | 37.5 | (91) | repetition of TnC terminals | ||
nTnC | [ ] | – | number of TnC terminals per half-sarcomere primitive (two actin filaments and two tropomyosin helices) | ||
nact | [ ] | 7 ⋅ nTnC≈820 | – | number of active sites per half-sarcomere primitive | |
Myosin filament | [μm] | 0.8 | (91) | length of half-myosin filament (backbone) | |
[μm] | (91) | half-myosin bare zone width | |||
rmbb | [nm] | 7.5 | (19) | inner myosin backbone (rod) radius | |
[nm] | 13 | (60) | charge location on myosin head | ||
[nm] | 14.3 | (91) | repetition of myosin crowns (each three double-heads) | ||
nS1 | [ ] | – | number of myosin double-heads per half-sarcomere | ||
χact,mbb | [ ] | 2:1 | – | ratio actin to myosin filaments | |
ncb,max | [ ] | (93,94) | maximum number of possible cross-bridges | ||
ς | [ ] | 1.8 | (93,94) | reciprocal of ratio of maximally formed cross-bridges | |
[ ] | 0.1 | (95), Table 1 | ratio of force between false and proper cross-bridges | ||
Hill equation | [ ] | state [0 … 1] | – | relative concentration of calcium ions | |
ν | [ ] | 2.5 | (96) | Hill exponent | |
[ ] | 1/40 | (96) | Hill coefficient | ||
Half-sarcomere geometry (all values here for hexagonal lattice) | [μm] | state [0.4 … 2.2] | – | half-sarcomere length | |
[μm] | – | half-sarcomere reference length | |||
κ10 | [ ] | – | lattice constant | ||
[nm] | (50) | lattice spacing as function of | |||
d10,ref | [nm] | 37 | (51), Table 1 | lattice spacing at | |
[nm] | – | (center) distance actin-to-actin filament | |||
[nm] | – | (center) distance actin-to-myosin backbone | |||
[nm] | – | (center) distance myosin-to-myosin backbone | |||
[nm] | – | surface distance actin-to-myosin backbone | |||
CSAhsp | [μm2] | – | cross-sectional area of half-sarcomere primitive | ||
CSAhsp,ref | [μm2] | – | reference cross-sectional area of half-sarcomere primitive | ||
[μm3] | – | constant half-sarcomere primitive volume | |||
Vhsp,ref | [μm3] | – | half-sarcomere primitive reference volume | ||
Electrostatics, Debye-Hückel theory | T | [K] | 280 … 310 | – | temperature of 7 … 37°C |
kB | [N ⋅ m ⋅ K−1] | 1.381 ⋅ 10−23 | – | Boltzmann constant | |
e0 | [C] | 1.602 ⋅ 10−19 | elementary charge | ||
[ ] | integer | – | charge number (valence) of ion i | ||
[ ] | integer | – | charges on actin/myosin backbone and the head (S1) | ||
qi | [C] | – | absolute electric charge of ion i | ||
ci | [mol/L] | solution-dependent | – | molar concentration of ion i | |
I | [mol/L] | (97) | ionic strength of a solution with n sorts of ions | ||
NA | [mol−1] | 6.02214 ⋅ 1023 | – | Avogadro constant | |
λ | [nm] | (19,98) | Debye length in electrolyte solution | ||
ϵ0 | [C2 · N−1 · m−2] | 8.854 ⋅ 10−12 | – | vacuum permittivity | |
ϵr | [ ] | ≈80 for water | (99) | dielectric constant (relative permittivity) of the solvent | |
K0(x),K1(x) | [ ] | function | – | modified Bessel functions of second kind | |
[J] | (100,101) | Debye-Hückel potential energy of cylindrical ion i of radius Rc and length , attracting charge qj | |||
FDHcyl(d) | [N] | – | Debye-Hückel force of cylindrical ions |
Which of these are optimizer-fitted parameters is given in Table 3. Activation and half-sarcomere length are state variables. T was set to the temperature at which the experiment was performed. The other entries are either physical constants or auxiliary values/functions.