Table 3.

Correlation among line B proportions estimated with different methods^a for the simulated data

Lines	Method	LR	ADM	REL_GP	REL_GP_noF
Closely-related	BOA	0.690	0.704	0.936	0.942
	LR	1	0.943	0.633	0.644
	ADM	0.943	1	0.647	0.659
	REL_GP	0.633	0.647	1	0.994
	REL_GP_noF	0.644	0.659	0.994	1
Distantly-related	BOA	0.878	0.903	0.948	0.956
	LR	1	0.963	0.817	0.834
	ADM	0.963	1	0.844	0.859
	REL_GP	0.817	0.844	1	0.991
	REL_GP_noF	0.834	0.859	0.991	1
Unrelated	BOA	0.948	0.965	0.951	0.961
	LR	1	0.975	0.890	0.905
	ADM	0.975	1	0.917	0.930
	REL_GP	0.890	0.917	1	0.989
	REL_GP_noF	0.905	0.930	0.989	1

^aLine B proportions are estimated from estimated breed-origin-of-alleles (BOA), using linear regression on mean allele counts within line (LR), ADMIXTURE analysis (ADM), the genomic relationship with maternal grandsire (REL_GP), or this relationship after adjusting all self-relationships to 1 (REL_GP_noF)