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. 2022 Jun 15;54:44. doi: 10.1186/s12711-022-00728-4

Table 5.

Different quality measures of the estimateda line B and C proportions for the broiler data

Measure LR ADMIXTURE REL_GP REL_GP_noF
Accuracy 0.917 0.927 0.861 0.902
Dispersion bias 1.091 1.138 1.146 1.232
Max 0.068 0.066 0.149 0.102
RMSE 0.018 0.017 0.023 0.020

RMSE root mean squared error

aLine proportions are estimated using linear regression on mean allele counts within line (LR), ADMIXTURE analysis after pruning SNPs based on r2 > 0.5, the genomic relationship with maternal grandsire (REL_GP), or this relationship after adjusting all self-relationships to 1 (REL_GP_noF)