Table 5.
Different quality measures of the estimateda line B and C proportions for the broiler data
Measure | LR | ADMIXTURE | REL_GP | REL_GP_noF |
---|---|---|---|---|
Accuracy | 0.917 | 0.927 | 0.861 | 0.902 |
Dispersion bias | 1.091 | 1.138 | 1.146 | 1.232 |
Max | 0.068 | 0.066 | 0.149 | 0.102 |
RMSE | 0.018 | 0.017 | 0.023 | 0.020 |
RMSE root mean squared error
aLine proportions are estimated using linear regression on mean allele counts within line (LR), ADMIXTURE analysis after pruning SNPs based on r2 > 0.5, the genomic relationship with maternal grandsire (REL_GP), or this relationship after adjusting all self-relationships to 1 (REL_GP_noF)