Table 1.
Vasopressin responsive phosphorylation sites in PKA-null cells
Accession | Gene Symbol | Site(s) | Protein Name | Centralized Sequence | Median Log2(dDAVP/ Vehicle) | −log10 (Pfp) |
---|---|---|---|---|---|---|
| ||||||
P59729 | Rin3 | S411 | Ras and Rab interactor 3 | GISRTAS*LNLPPQ | 0.86 | 3.52 |
Q8R4H2 | Arhgef12 | S41 | Rho guanine nucleotide exchange factor 12 | KVERSSS*HDFDPT | 0.79 | 3.28 |
Q8C1B1 | Camsap2 | S439 | Calmodulin-regulated spectrin-associated protein 2 | GIIRSVS*NEGLTL | 0.75 | 3.16 |
Q9Z1E4 | Gys1 | S711¶ | Glycogen [starch] synthase, muscle | GSKRSNS*VDTGPS | 0.70 | 2.98 |
P45481 | Crebbp | S120 | CREB-binding protein | LGAMGKS*PLNQGD | 0.59 | 2.63 |
Q9D279 | Misp | S364 | Mitotic interactor and substrate of PLK1 | GLQRSLS*SDCILS | 0.59 | 2.67 |
Q9ERG2 | Strn3 | S202 | Striatin-3 | RSQRVRS*LLGLSN | 0.58 | 2.95 |
Q3UHI0 | Ccser2 | S222 | Serine-rich coiled-coil domain-containing protein 2 | KMVRSQS*FSHSIQ | 0.58 | 2.66 |
P19001 | Krt19 | S59 | Keratin, type I cytoskeletal 19 | VTSSSGS*YGGVRG | 0.52 | 2.47 |
Q68ED7 | Crtc1 | S151 | CREB-regulated transcription coactivator 1 | SWRRTNS*DSALHQ | 0.49 | 2.24 |
Q3TWF6 | Wdr70 | S641 | WD repeat-containing protein 70 | MFAQVES*DDEESK | 0.49 | 2.75 |
A6H8H2 | Dennd4c | S1321 | DENN domain-containing protein 4C | YKDRSTS*LSALVR | 0.48 | 1.98 |
Q9CY58 | Serbp1 | S203 | Plasminogen activator inhibitor 1 RNA-binding protein | SGSDRSS*FSHYSG | 0.48 | 2.18 |
Q8BG32 | Psmd11 | S14 | 26S proteasome non-ATPase regulatory subunit 11 | EFQRAQS*LLSTDR | 0.48 | 1.97 |
Q3B7Z2 | Osbp | S377 | Oxysterol-binding protein 1 | GHKRTGS*NISGAS | 0.39 | 2.48 |
Q60875 | Arhgef2 | S163 | Rho guanine nucleotide exchange factor 2 | GHFNDES*PLGLRQ | 0.39 | 2.11 |
Q60875 | Arhgef2 | S151 | Rho guanine nucleotide exchange factor 2 | SLAKSVS*TTNIAG | 0.39 | 2.31 |
Q9ESE1 | Lrba | T1011 | Lipopolysaccharide-responsive and beige-like anchor protein | SNTELQT*HDMSSD | 0.37 | 2.44 |
Q6GYP7 | Ralgapa1 | S772 | RalGTPase-activating protein subunit alpha-1 | TRVRHFS*QSEDTG | 0.33 | 2.62 |
Q9ESE1 | Lrba | S1000 | Lipopolysaccharide-responsive and beige-like anchor protein | SIGRASS*IDSASN | 0.30 | 2.75 |
Q9Z1W9 | Stk39 | S383 | STE20/SPS1-related proline-alanine-rich protein kinase | RRVPGSS*GHLHKT | 0.29 | 2.60 |
P54310 | Lipe | S559 | Hormone-sensitive lipase | SMRRSVS*EAALAQ | 0.25 | 3.34 |
P99027 | Rplp2 | S79 | 60S acidic ribosomal protein P2 | VSAAPGS*AAPAAG | −0.18 | 1.33 |
Q8BTM8 | Flna | S968 | Filamin-A | SVGVSPS*LDLSKI | −0.20 | 2.98 |
Q9JKB3 | Ybx3 | S52 | Y-box-binding protein 3 | AALLAGS*PGGDAA | −0.20 | 2.75 |
Q62074 | Prkci | T411 | Protein kinase C iota type | PGDTTST*FCGTPN | −0.34 | 2.39 |
Q62074 | Prkci | T415 | Protein kinase C iota type | TSTFCGT*PNYIAP | −0.35 | 2.32 |
Q9D1C9 | Rrp7a | S99 | Ribosomal RNA-processing protein 7 homolog A | KPDLAES*PTEPKS | −0.35 | 2.12 |
Q8C0T5 | Sipa1l1 | S1626 | Signal-induced proliferation-associated 1-like protein 1 | HGEFSAS*DSSLTD | −0.45 | 1.99 |
Q9Z2H5 | Epb41l1 | S378 | Band 4.1-like protein 1 | TFFRLVS*PEPPPK | −0.45 | 2.39 |
P99027 | Rplp2 | S86 | 60S acidic ribosomal protein P2 | AAPAAGS*APAAAE | −0.59 | 3.65 |
P39447 | Tjp1 | S280 | Tight junction protein ZO-1 | LSDSIHS*ANASER | −0.65 | 2.25 |
Q3UHX2 | Pdap1 | S60¶ | 28 kDa heat- and acid-stable phosphoprotein | EKKSLDS*DESEDE | −0.83 | 1.25 |
P11276 | Fn1 | S285¶ | Fibronectin | ASAGSGS*FTDVRT | −0.84 | 3.67 |
Q99J36 | Thumpd1 | S88 | THUMP domain-containing protein 1 | DQQPSGS*EGEDDD | −0.94 | 4.60 |
P09405 | Ncl | S145 | Nucleolin | NAKKEDS*DEDEDE | −1.64 | 16.00 |
Q3THK3 | Gtf2f1 | S311 | General transcription factor IIF subunit 1 | SESSEES*EEEKPP | −2.46 | 15.60 |
These sites have redundant quantification evidence showing similar changes (e.g. PKA-null and PKA-intact cells, site containing peptides with or without missed cleavage, and HCD-EThcD pairs). The MS1 spectra of monophosphopeptides containing these sites can be found in Supplemental Figure 3. Eleven of the increased phosphorylation sites are putative SNF1-subfamily targets based on the presence of an (R/K)-(T/S)-X-p(S/T) motif with nonpolar amino acid in position −5 and/or position +4 relative to the phosphorylated amino acid (underlined amino acids).