Table 5.
Sr. No. | Transcript ID | Primer Pair | Primer Sequence | Tm (°C) | GC % | Amplicon Size (bp) |
---|---|---|---|---|---|---|
1 | TRINITY_DN521405_c2_g2_i1 (Avenin-like a4) | SP-QF33 | TGCCCTTGCTGCTGTCGCATGA | 55.44 | 59.09 | 137 |
SP-QR33 | ACAGATGTGGCAGGCAAGCGGT | 57.08 | 58.33 | |||
2 | TRINITY_DN483169_c0_g1_i6 (Alpha-amylase inhibitor 0.19) | SP-QF24 | AGCCGAGTACGACGCATGGAGCGTT | 58.21 | 60.00 | 119 |
SP-QR24 | TGCCATTGCACTGGAGCCTCAGCA | 57.21 | 58.33 | |||
3 | TRINITY_DN518599_c1_g1_i2 (Aspartic proteinase oryzasin-1) | SP-QF31 | TTAAGCTAGCCCGCTTGTGCCA | 52.72 | 54.55 | 114 |
SP-QR31 | ACGGCAAACTAGCGAATCCTGCGT | 55.07 | 54.17 | |||
4 | TRINITY_DN326896_c0_g1_i1 (Elongation factor 1-alpha) | SP-QF10 | TGAAGGAGCCCTTTCCCATCTCAGCA | 55.92 | 53.85 | 122 |
SP-QR10 | ACACGTAGATTCGGGCAAGTCCACCA | 56.02 | 53.85 | |||
5 | TRINITY_DN385005_c2_g1_i2 (Zinc transporter 6) | SP-QF12 | GTCCCTGCTGTCAGGTGGAGGAATAA | 54.07 | 53.85 | 125 |
SP-QR12 | ACGACCGACATGCATCTGAAGTGGA | 54.23 | 52.00 | |||
6 | TRINITY_DN425597_c0_g2_i2 (heat shock protein 83-like) | SP-QF15 | AAGCCAGAAGACAGGAGCGCAGTT | 54.72 | 54.17 | 148 |
SP-QR15 | ACATGGCAGCAAAGAAACACCTGGAG | 54.01 | 50.00 | |||
7 | TRINITY_DN490415_c0_g1_i8 (Alpha-gliadin) | SP-QF25 | ATTTCCGCGAACTGGGGCAGTTGT | 55.47 | 54.17 | 119 |
SP-QR25 | TCCTTCCAACAGCCTCAGCAGCAA | 54.81 | 54.17 | |||
8 | TRINITY_DN365152_c1_g1_i1 (Curcuminoid synthase) | SP-QF11 | ACGCATTCCGTAGCGCCATTGT | 53.39 | 54.55 | 143 |
SP-QR11 | TATATTGTCCAGGATCGGACGCCCT | 53.19 | 52.00 | |||
9 | TRINITY_DN472370_c0_g2_i1 (Uncharacterized protein) | SP-QF21 | AGAGGCCTTGGGGTTGAAACAACCTT | 55.02 | 50.00 | 146 |
SP-QR21 | TTCATCCCGCATCGCCAGTTCTGCTT | 56.99 | 53.85 | |||
10 | TRINITY_DN441674_c0_g2_i1 (Putative uncharacterized protein) | SP-QF17 | GTTTGTTTTACGGCGTAGCCTCCCGA | 55.24 | 53.85 | 143 |
SP-QR17 | ACTCAAGCCTCGCTTGGTATTGGGCA | 56.65 | 53.85 |
GC content of the primers was ranged from 50.00 to 60.00% and the size of amplicon was observed to be ranged from 114 to 148.