Table 1.

Cis elements identified in promoter sequences of plant NLR genes.

Cis element	Species	Putative function	Reference
Common
CAAT	Pinus monticola	Common element	Liu and Xiang, 2019 Wang et al., 2022b Rampino et al., 2017
	Lagenaria siceraria
	Triticum durum
TATA-box	P. monticola	Core element	Liu and Xiang, 2019 Wang et al., 2022b Qi et al., 2022 Rampino et al., 2017
	L. siceraria
	Tomato
	T. durum
Pathogen-inducible/stress
ABRE	Rice	Abscisic acid responsive element	Ding et al., 2020 Wang et al., 2022b Rampino et al., 2017
	L.a siceraria
	T. durum
AS-1 (TGACG)	Rice	Salicylic acid responsive element	Kong et al., 2018 Goyal et al., 2021 Diao et al., 2021
	Vitis vinifera
	Glycine max
BIHD-binding site (TGTCA)	P. monticola	Regulation of defense-related genes	Liu and Xiang, 2019
CGCG-box (ACGCGT)	P. monticola	Stress tolerance genes	Liu and Xiang, 2019
CGTCA-motif and TGACG-motif	L. siceraria	Methyl jasmonate responsive element	Wang et al., 2022b Rampino et al., 2017 Cui et al., 2017
	T. durum
	G. max
E-box (CANNTG)	Rice	Jasmonic acid responsive element	Miyamoto et al., 2012
ERE-box (ATTTCAAA)	P. monticola	Ethylene responsive element	Liu and Xiang, 2019 Diao et al., 2021 Wang et al., 2020 Rampino et al., 2017
	G. max
	Actinidia chinensis
	T. durum
G-box	Rice	Regulation of defense-related genes	Kong et al., 2018 Rampino et al., 2017
	T. durum
GARE-motif, P-box, and TATC-box	L. siceraria	Gibberellin responsive element	Wang et al., 2022b Rampino et al., 2017 Cui et al., 2017
	T. durum
	G. max
GCC-box (AGCCGCC)	Rice	Ethylene and pathogen responsive gene	Kong et al., 2018 Wang et al., 2021
	Saccharum
	spontaneum
GT1-box (GAAAAA)	P. monticola	Pathogen and salt-induced gene expression	Liu and Xiang, 2019
GTTGA	Zea mays	Rhizoctonia solani inducible	Li et al., 2017
H-box (CCTACCN7CT)	Rice	Regulation of defense-related genes	Kong et al., 2018
MYB recognition elements	Rice	Stress responsive elements	Kong et al., 2018 Ding et al., 2020 Wang et al., 2020
	S. spontaneum
	A. chinensis
Myb1-box (GTTAGTT)	P. monticola	Regulation of defense and drought-related genes	Liu and Xiang, 2019 Wang et al., 2022b
	L. siceraria
MYC elements	Rice	Stress responsive elements	Ding et al., 2020
STRE	Rice	Stress responsive elements	Ding et al., 2020
TATTT	Z. mays	Rhizoctonia solani inducible	Li et al., 2017
TC-rich repeats	V. vinifera	Stress responsive element	Goyal et al., 2021 Wang et al., 2022b Cui et al., 2017
	L. siceraria
	G. max
TCA element	V. vinifera	Salicylic acid responsive element	Goyal et al., 2021 Cui et al., 2017
	G. max
TGA element	V. vinifera	Auxin responsive element	Goyal et al., 2021 Wang et al., 2022b
	L. siceraria
W-box (TTTGACY)	P. monticola	Regulation of defense-related genes	Liu and Xiang, 2019 Wang et al., 2021 Wang et al., 2020
	V. vinifera
	Arabidopsis
	S. spontaneum
	A. chinensis
Other (Growth/development)
ACACNNG	P. monticola	Abscisic acid induced gene expression	Liu and Xiang, 2019
ARR1-binding site (AGATT)	P. monticola	Cytokinin responsive gene	Liu and Xiang, 2019
MADS-box/ CArG-motif (CCW6GG)	P. monticola	Regulation of plant flowering time and vernalization genes	Liu and Xiang, 2019
Circadian motif (CAAN4ATC)	P. monticola	Circadian gene expression	Liu and Xiang, 2019
NtBBF1 binding site (ACTTTA)	P. monticola	Tissue-specific expression and auxin induction	Liu and Xiang, 2019
SRE (TTATCC)	P.s monticola	Activation of axillary bud outgrowth	Liu and Xiang, 2019
T-box (ACTTTG)	P. monticola	Light activated element	Liu and Xiang, 2019
WUS-binding site (TTAATGG)	P. monticola	Establishment and maintenance of stem cells in shoot and floral meristems	Liu and Xiang, 2019
W-box	Malus domestica	Sorbitol inducible element	Meng et al., 2018