Abstract
Voxel-based physiological (VBP) variables derived from blood oxygen level dependent (BOLD) fMRI time-course variations include: amplitude of low frequency fluctuations (ALFF), fractional amplitude of low frequency fluctuations (fALFF) and regional homogeneity (ReHo). Although these BOLD-derived variables can detect between-group (e.g. disease vs control) spatial pattern differences, physiological interpretations are not well established. The primary objective of this study was to quantify spatial correspondences between BOLD VBP variables and PET measurements of cerebral metabolic rate and hemodynamics, being well-validated physiological standards. To this end, quantitative, whole-brain PET images of metabolic rate of glucose (MRGlu; 18FDG) and oxygen (MRO2; 15OO), blood flow (BF; H215O) and blood volume (BV; C15O) were obtained in 16 healthy controls. In the same subjects, BOLD time-courses were obtained for computation of ALFF, fALFF and ReHo images. PET variables were compared pair-wise with BOLD variables. In group-averaged, across-region analyses, ALFF corresponded significantly only with BV (R = 0.64; p < 0.0001). fALFF corresponded most strongly with MRGlu (R = 0.79; p < 0.0001), but also significantly (p < 0.0001) with MRO2 (R = 0.68), BF (R = 0.68) and BV (R = 0.68). ReHo performed similarly to fALFF, with significant strong correspondence (p < 0.0001) with MRGlu (R = 0.78), MRO2 (R = 0.54), and, but less strongly with BF (R = 0.50) and BV (R = 0.50). Mutual information analyses further clarified these physiological interpretations. When conditioned by BV, ALFF retained no significant MRGlu, MRO2 or BF information. When conditioned by MRGlu, fALFF and ReHo retained no significant MRO2, BF or BV information. Of concern, however, the strength of PET-BOLD correspondences varied markedly by brain region, which calls for future investigation on physiological interpretations at a regional and per-subject basis.
Keywords: Voxel-Based Physiology, Metabolism, Brain, Hemodynamics, PET, fMRI, BOLD, ALFF, fALFF, ReHo, VBP
1. Introduction
Voxel-wise measurements of the blood oxygenation level dependent (BOLD) signal in the resting state are widely used and have demonstrated regional abnormalities in multiple neurologic (Han et al., 2011; Hou et al., 2014; Li et al., 2002, 2014), psychiatric (Bing et al., 2013; Gray et al., 2020), and developmental disorders (Cortese et al., 2021; Lau et al., 2019). The rapid adoption of these metrics is attributable to several properties that make them highly amenable to clinical application, as follows. Being MRI-based, they can be performed without radiotracers. Measured in the resting state, they require no task-paradigm training and minimize in-scanner compliance, thereby facilitating application in clinical and developmental populations (Cole et al., 2010). With short (12–16 min) acquisitions, analysis pipelines can be performed reliably (Birn et al., 2013) using semi-automated toolboxes such as BRANT (https://sphinx-doc-brant.readthedocs.io/), CONN (https://web.conntoolbox.org/) and DPARSF (rfmri.org/). These voxel-based metrics and coordinate-based reporting can be further used for cross-study meta-analytic comparisons (Sha et al., 2018; Zang et al., 2015), providing statistically valid generalizations of disease patterns (Fox et al., 2014). A notable shortcoming of these methods, however, is that their physiological interpretations are problematic, with a paucity of studies testing their correspondence to traditional hemodynamic and metabolic physiological variables.
The low-frequency band of the BOLD signals is considered reflective of neuronal activity (Biswal et al., 1995), which exhibits periodicity at rest (Golanov et al., 1994). Physiological models demonstrate that the BOLD signal responses are convolved functions of blood volume, blood flow, and utilization rates of oxygen and glucose (Buxton et al., 1998; Heeger and Ress, 2002; Raichle, 1998). Neuronal-modulated hemodynamic fluctuation in BOLD signals can be mostly separated from non-neuronal systemic fluctuations due to cardiac and respiratory cycles by applying low-frequency-band-pass filters (0.01–0.1 Hz, or 0.01 – 0.08 Hz) (Birn et al., 2006; Bumstead et al., 2017; Cordes et al., 2000; Frederick et al., 2012; Magri et al., 2012), although not entirely (Birn et al., 2006; Shmueli et al., 2007; Xifra-Porxas et al., 2021). To quantify dynamics of neuronally modulated BOLD fluctuations, several voxel-based metrics were developed, including fluctuation amplitude (Zang et al., 2007; Zou et al., 2008), fluctuation coherence among neighboring voxels (Zang et al., 2004), and others (Garrett et al., 2013a; Salvador et al., 2007; Tomasi and Volkow, 2010a; Wink et al., 2006). Amplitude of low frequency fluctuations (ALFF) models the amplitude of a specific frequency band (usually 0.01–0.1 Hz) of BOLD oscillations. Fractional ALFF (fALFF) normalizes ALFF with the amplitude of the entire frequency spectrum to reflect the relative contribution of low-frequency fluctuations to the entire pattern (Zou et al., 2008). Regional homogeneity (ReHo) estimates local synchronization of band-filtered BOLD signal among neighboring voxels and, thereby, indicates a co-varying cluster of voxels (Zang et al., 2004). As voxel-based metrics of the BOLD signal, ALFF, fALFF and ReHo are considered to be reflective of local brain properties - independent of long-range connectivity- in spatially discrete regions (Li et al., 2012a,b; Lv et al., 2018). However, the pattern of associations and causal links between these voxel-based BOLD metrics and more traditional voxel-based physiological variables are not well characterized. This shortcoming impedes the physiological interpretation of voxel-wise rsfMRI findings, particularly in the context of neurological and psychiatric disorders and aging-related processes (Gauthier et al., 2013; Girouard and Iadecola, 2006).
Physiological inferences of voxel-based BOLD metrics can be augmented by using a multi-modality, quantitative imaging approach, an endeavor which has been applied in several reports. Arterial Spin labeling MRI and 18F fluorodeoxyglucose (18FDG) positron emission tomography (PET), in conjunction with rsfMRI, have shown that hemodynamics and metabolism are closely associated with BOLD-based metrics (Aiello et al., 2015; Bernier et al., 2017; Fan et al., 2019; Li et al., 2012a,b; Zhang et al., 2018a). Notably, the relative metabolic correspondences of ALFF, fALFF and ReHo are not well established. We would argue that because of the intrinsic complexity of hemodynamic and metabolic influences on the BOLD signal, a comprehensive physiological battery is needed to disentangle the respective contributions of these physiological variables to voxel-based BOLD metrics. Further, the functional architecture of the brain also influences hemodynamic-metabolic coupling, necessitating that optimal interpretation of the BOLD-PET interplay must take these network-based regional variations into account (Di et al., 2019; Di and Biswal, 2012, 2017; Mueller et al., 2013; Taylor et al., 2012; Wehrl et al., 2013; Xu et al., 2019).
As hemodynamics and metabolism exhibit strong coupling in the resting state (Hillman, 2014), constancy of local blood supply is most likely regulated to meet the demand of oxidative phosphorylation of glucose (Fox and Raichle, 1986; Lenz et al., 1998, 1999; Roy and Sherrington, 1890), which entails delivery of oxygen and glucose, and removal of metabolic byproducts. ALFF, fALFF and ReHo – although they are hemodynamically derived measures – likely will be mostly driven by, or covary with, baseline metabolic demand, as quantified by metabolic rate of glucose (MRGlu) and metabolic rate of oxygen (MRO2). Recent reports, using information theory metrics to quantify causality and non-linear relationships in functional neuroimaging, show that blood volume (BV) and MRO2 have predominant driving influences on blood flow (BF) in neonatal brain (Nourhashemi, 2020; Nourhashemi et al., 2017). This inferential strategy has also been used to quantify causal relationships of voxel-based BOLD metrics and traditional voxel-based physiology, by implementing conditional and interaction analyses with information theory metrics (Rosas et al., 2019), an approach emulated here.
The current study sought: (1) to inform physiological interpretations of widely-used BOLD-based rsfMRI metrics (ALFF, fALFF and ReHo); and, (2) to test the coupling hypothesis of ALFF/fALFF/ReHo with MRGlu and MRO2. To this end, resting-state measures with two functional imaging modalities were employed: PET and fMRI. PET was used to measure glucose consumption (metabolic rate of glucose, MRGlu), oxygen consumption (metabolic rate of oxygen, MRO2) and hemodynamics (cerebral blood volume, BV; cerebral blood flow, BF). T2* BOLD was used for a variety of VBP fMRI measurements. Linear associations between voxel-based BOLD metrics, metabolic and hemodynamic physiological variables were identified in across-region and across-subject comparisons. Further, physiological information underlying the voxel-based BOLD metrics was quantified via mutual information and conditional mutual information analyses.
2. Methods
The study protocol was approved by the Institutional Review Board of The University of Texas Health Science Center at San Antonio (HSC20170187H). The radioactive contrast agents used were approved by the institutional Radioactive Drug Research Committee, and an Investigational New Drug Application (IND number: 039789).
2.1. Participants
Study participation was limited to young, healthy controls. Exclusion criteria determined by medical history were: systemic disorders (e.g., diabetes, hypertension), neurological or psychiatric disorders, metal implants, claustrophobia, and pregnancy. Non-pregnancy was confirmed by pregnancy test prior to study enrollment. Sixteen participants (8 males, M, and 8 females, F, 27.5±5.0 years old) were recruited.
2.2. Study procedures
Each subject received MR and PET acquisition on the same day. The MR and PET scanners are physically adjacent (< 1 min walk). For each subject, the MR session included: structural MRI and resting-state fMRI. The PET scan session included: arterial and venous catheterization, transmission scan, two three-tracer 15O tracer sessions and one 18FDG session. All 16 subjects completed the first 15O PET session. Ten subjects (5M/5F, 26.1±4.3 years old) completed both first and second 15O PET sessions. (From this cohort, demographics and test-retest reliability have been previously reported (Jiang, 2020)). Eleven 11 subjects (4M/7F, 26.5 ±4.7 years old) completed the 18FDG session. Fifteen subjects (7M/8F, 26.2 ± 4.4 years old) completed the rsfMRI session.
Plasma glucose, hematocrit were measured from venous blood samples obtained before the PET session. Urinary human chorionic go nadotropin was obtained from women participants. Arterial oxygenation saturation (Ya) was measured using a pulse oximeter during the MR session. All data were de-identified.
2.3. MRI Acquisitions
All MRI experiments were performed on a Siemens 3T system (Trio, Siemens Healthcare, Erlangen, Germany), with a transmitting body coil and a 12-channel receiving head coil. Foam padding was placed to minimize intra-scanning head motion.
Each subject first underwent an anatomical scan using a T1-weighted Magnetization-Prepared-RApid-Gradient-Echo (MPRAGE) sequence, with the following parameters: sagittal slice, voxel size = 1.0 mm isotropic; TR/TE/TI = 2100/4.2/1100 ms; Matrix = 256 (readout direction) × 224 (phase-encoding direction) × 176 (slices); echospacing = 9.4 ms; scan duration = 4.3 min.
Resting-state fMRI was performed using a multiband T2*-weighted gradient echo EPI sequences (Xu et al., 2013), with the following parameters: multi band factor =3; voxel size = 2.4 mm isotropic; TR/TE = 1400/30 ms; Matrix = 88 × 88 × 60 (slices); flip angle = 52°; 700 volumes; scan duration = 16 min. Before the scan began, subjects were instructed to stay still and awake with eyes closed, similar to the resting condition in the PET session. Before the rsfMRI acquisition, subjects were again reminded not to move any part of their body and to keep their eyes closed.
2.4. PET acquisitions
The PET data were acquired on a CTI ECAT HR+ scanner (Siemens, Knoxville, TN). A thermoplastic facial mask was used to minimize head motion during scans. The 15O-labeled tracers were produced by an onsite cyclotron (MC-17, Scanditronix Magnet AB, Sweden).
Before the PET scans, an catheter was placed in a radial artery; an antecubital venous catheter was placed in the contralateral forearm. A transmission scan was performed for attenuation correction.
Subsequently, two sessions of 15O PET scans were performed to sequentially quantify PET-based BV, BF and MRO2, with different radiotracers (C15O, H215O, and 15O2). Acquisition parameters details for 15O PET have been described in (Jiang et al., 2021).
For the 18FDG scans, after bolus intravenous administration of 5mCi±10% FDG, 70 frames of 3D dynamic emission scans were acquired over 70 min (70 frames x 1 min). Sixteen arterial blood samples (about 1.5 mL each) were collected to calculate the arterial input function (6 × 30s, 10 × 10min). After centrifuge, blood serum was extracted to determine the arterial input function.
During scans and arterial blood sample acquisition, subjects laid quietly in a dark room with their eyes closed. PET reconstruction was by filtered back-projection using a 3 mm smoothing kernel, resulting in a voxel size of 2.0 × 2.0 × 2.4 (slice) mm3.
2.5. RsfMRI data processing
Calculation of ALFF, fALFF and ReHo was performed in Matlab (Mathworks Inc.) using DPARSF (V5.1, http://rfmri.org/DPARSF) (Yan and Zang, 2010). The first 10 time points were deleted. The EPI images were slice-timing corrected and realigned. Subsequently, EPI images were regressed for nuisance covariates that were unrelated to neuronal activity (white matter, CSF, and head motion). Nuisance regression used Friston 24-parameter model for head motion (Friston, 1996). For white matter, and CSF, the mean timeseries across voxels were regressed out, using DPARSF default recommended parameters. To eliminate the effects of spatial smoothing on the indices, the original voxel size (2.4mm) was used in the spatial normalization using DARTEL (Ashburner, 2007).
ALFF/fALFF were calculated with filtered signals within the low-frequency range (0.01–0.08 Hz) without additional filtering. Specifically, fractional ALFF was computed by the ratio of the filtered frequency band (0.01 – 0.08 Hz) against the whole-available frequency band (limited by the imaging acquisition). ReHo was computed via Kendall’s coefficient of concordance (KCC) as a local coherence metric of BOLD signal (Zang et al., 2007), with 27 neighboring voxels without smoothing.
All parametric images were calculated in native space and then normalized to the 2 mm Montreal Neurological Institute (MNI) template (Fonov et al., 2009).
To validate the reliability of the resting state scan, the 16 min time series were split into half samples (350 volumes per half-sample) and the same analyses as the whole time series (700 volumes) were performed. Inter-class correlations were computed to quantify the reliability of BOLD metrics between the two split datasets and between the first 350 volume versus the whole 700 volume dataset. Additionally, framewise displacement of the 16 min scan was calculated to indicate the quality of resting state acquisition, using FSL. Together, resting state fMRI reliability was quantified with framewise displacement during acquisition and voxel-wise inter-class correlation (ICC) of BOLD metrics, applying the gray matter mask from MNI ICBM 152 template. Generally, ICC > 0.75 was considered of excellent agreement.
To simplify cross-subject comparisons, various normalization methods were applied to the rsfMRI metrics. ALFF/fALFF/ReHo was transformed into Z-scores by subtracting mean values within the gray matter mask, and then dividing by the standard variation within the mask. Two types of reported normalized rsfMRI metrics (z-normalized, and demeaned, with a MNI gray matter and white matter mask) were also provided for further analyses, as normalized ALFF/fALFF/ReHo is commonly used in the literature. These two types of normalized maps (z-normalized and demeaned) were primarily used in visualizing spatial similarities between rsfMRI metrics and PET hemodynamic-metabolic metrics, and inter-subject comparisons.
2.6. PET data processing
Modeling was performed per subject using the Raichle method for BF (Raichle et al., 1983) and BV (Grubb et al., 1978)), the Mintun method for MRO2 (Mintun et al., 1984), and the Phelps method for MRGlu (Phelps et al., 1979) with blood volume correction threshold of 8 ml/100g. The brain tissue density was assumed to be 1.05 g/ml. The small vessel to large vessel hematocrit ratio was assumed to be 0.85 (Grubb et al., 1973). For robust BV and MRO2 estimation, minimal delay and dispersion correction were performed, in accordance with other studies (Cho et al., 2020). Other details for 15O PET scans and processing are described in a previous publication (Jiang et al., 2021).
Dynamic 18FDG raw data were corrected for potential motion using rigid-body (6 DOF) registration between each frame and the mean images using FLIRT in FSL (Jenkinson, 2001), with a mutual information cost function. Signals in the last 40 min were used for kinetic analyses using the Schimidt model (Schmidt et al., 1992). For static MRGlu, the lumped constant was set to 0.52. Effects of blood volume in BF and MRO2 were corrected in the modeling methods. The effect of blood volume in MRGlu was corrected using the BV map as weights. Venous vasculature in the BV map was masked using a threshold of 8 mL/100 g and further manual inspection.
Parametric maps of BF, MRO2 and MRGlu were linearly registered to individual T1w brain images with FLIRT, and then non-linearly normalized to 2mm MNI ICBM space using FNIRT in FSL (Jenkinson et al., 2002; Jenkinson and Smith, 2001), with a mutual information cost function. BV maps were normalized with the deformation maps generated during spatial normalization of BF maps. Per findings in related reports, partial volume effects cause minimal overestimation of the correlations between FDG/MRGlu and ALFF/ReHo (Jiao et al., 2019). Head motion during dynamic scans may introduce errors during partial volume correction, especially when signal-to-noise ratio is low (Bettinardi et al., 2014). Partial volume effect correction in raw data was not performed, except for BF using the Iida method (Iida, 1988; Iida et al., 1991). To minimize partial volume effects in regional analysis, no additional smoothing was applied beyond registration and spatial normalization, as suggested in recent metabolism-flow-coupling reports (Cho et al., 2020; Fan, 2020; Henriksen et al., 2021; Hyder, 2016; Ishii, 2020; Narciso, 2021; Wesolowski et al., 2019). A threshold of BV (>10) was chosen to exclude any voxels that are likely to be in the large vein ventricles.
2.7. Statistical analyses
2.7.1. Spatial similarity
Spatial similarity between the z-normalized metrics was performed with voxel-wise paired T-test in each pair, to identify regions with significantly different regional contrasts between the modalities. Multiple comparison correction was performed with the Threshold Free Cluster Enhancement algorithm in PALM (Winkler et al., 2014) (family wise estimation corrected p threshold of 0.05, 5000 permutations), as null models for multi-modality brain imaging are still being actively develped (Alexander-Bloch et al., 2018; Markello and Misic, 2021). Surface views were rendered using BrainNet Viewer (Xia et al., 2013), with a corrected p threshold of 0.01. Voxel-wise spatial cross-correlations across the gray matter and white matter were quantified using fslcc in the FSL toolbox. Due to differences in acquisition protocols, image contrast mechanisms, spatial and temporal resolution, MR measurements of BOLD signal and PET measurement of brain physiology were considered as independent. Per-subject static images were concatenated into a 4D image as input for fslcc.
2.7.2. Across-region correlation
The across-region correlation analysis was performed for each pair of metrics in group averaged images by Pearson’s linear correlation, both in a weighted and unweighted manner. Tests of normality were performed before running the linear correlations. Mean values of each metric in standardized space were extracted using AAL-specified regions (116 ROIs for each metric). To avoid potential signals from non-gray-matter tissues, no dilation of ROIs was implemented. Additionally, to inform the effect of gray matter/white matter contribution to the correlation of values, partial correlations regressing out gray matter and white matter probability were performed in a voxel wise manner (details in Supplementary Result 1.2 Table D). As all images were normalized to the MNI 2 mm template, gray matter (GM) and white matter (WM) probability were estimated with the gray matter and white matter partial volume maps of the MNI template, using FSL FAST. This partial correlation approach was performed on a voxel-wise basis rather than on a ROI basis. The reason for this is that the value distribution of GM/WM probability within AAL ROIs were heavily tailed and had many extreme values (0 and 1), with the ROI-mean value of GM/WM probability not truly representing the probability of GM/WM. Consequentially, the resulting mean values of ROIs in the GM/WM probability map did not truly represent overall GM/WM partial volume effect within a ROI. To further clean potential signals from white matter and CSF, a group-averaged gray matter probability mask, generated by DARTEL segmentation, was applied prior to choosing the respective ROIs. Before the calculation of correlation, ROI values outside of 25%–75% quantiles were considered as outliers and removed in the subsequent analyses. A one-sample t-test was performed on correlation coefficients using Matlab, to test against the null hypothesis that the mean correlation coefficient was zero. For multiple comparison correction, a threshold of P < 0.0001 was utilized, (Bonferroni correction p = 0.05/116 = 0.00043).
2.7.3. Mutual information
Mutual information (MI) and other information theoretic quantities were calculated with the GCMI toolbox in (https://github.com/robince/gcmi). Conceptually, the entropy of each metric in group-averaged maps was quantified in bits with bias correction (Ince et al., 2017a). Conventional MI and Gaussian-Copula Mutual Information (MI normalized with Gaussian-Copula) were computed for each pair of metrics. To investigate interaction and synergy properties, conditional GCMI was calculated for each rsfMRI metric with various pairs of BF, BV, MRO2 and MRGlu. The term “condition” indicated how much MI is shared within two primary variables given the MI of the conditional variable is removed. Interaction Information (II) was calculated by subtracting MI with conditional MI to compare coupling or synergistic characters in different rsfMRI-PET combinations, with the high II indicating synergistic and low II indicating coupling tendency. Theoretically, conditional MI is non-negative, while II can be positive, zero, or negative.
3. Results
Fig. 1 illustrates the acquisition and processing pipeline of the dataset. Mean values in gray matter, white matter and gray matter + white matter are reported (Supplementary Results 1.1 Table A). As this paper focuses on group-level physiological interpretation of BOLD metrics, PET-data reliability was quantified with inter-subject coefficient of variation (Supplementary Results 1.1 Table A).
For head-motion during rsfMRI acquisition, mean framewise displacement of the whole imaging series across subjects was 0.22 ± 0.06 mm. This was consistent with the framewise displacement in first half of time-series (0.21 ± 0.05 mm) and in the second half (0.23 ± 0.06 mm).
As for reproducibility of BOLD metrics, inter-class correlation of BOLD metrics computed from the split dataset were all larger than 0.75 (ALFF: 0.86 ± 0.16, fALFF: 0.88 ± 0.16, ReHo: 0.84 ± 0.15). Inter-class correlation between the first dataset (340 volumes) and the whole-time-series dataset (700 volumes) were larger than 0.75 as well (ALFF: 0.88 ± 0.16, fALFF: 0.88 ± 0.16, ReHo: 0.91 ± 0.16. Additionally, for BOLD-PET associations, the two subsets of data were similar to the whole dataset in across region correlation analyses (Supplementary Results 1.1 Table B).
Fig. 2 illustrates spatial similarities between voxel-based BOLD matrices and the PET hemodynamic-metabolic battery in z-normalized values, (original values are compared in Supplementary Fig. 1). To quantify the spatial similarity, spatial cross-correlations between BOLD and PET metrics were reported on group-averaged level (Table 1, A). Paired T-test (Fig. 3) identified regions of different values between the z-normalized maps. The pattern identified by voxel-wise T-test agreed with the voxel-wise cross correlation results (Table 1, upper), as follows. Spatial contrast (i.e. z-normalized value) of ALFF was similar to BV, with few voxels identified as significantly different in Fig. 3a. Like-wise, spatial contrast of fALFF and ReHo were not different from BF and MRO2 (Fig. 3f, 3g, 3j, 3k). Although fALFF and ReHo had the highest voxel-wise spatial cross correlation with MRGlu, there were specific regions that the z-normalized values of fALFF and ReHo did not agree with z-normalized MRGlu (Fig. 3h, 3i). The detailed layout of these surface-projected maps is provided in the Supplementary Materials 2.2, 2.3 and 2.4.
Table 1.
Group Averaged | Per-Subject | ||||||||
(a) | Voxel-wise Cross Correlation | (c) | Voxel-wise Cross Correlation | ||||||
| |||||||||
ALFF | fALFF | ReHo | ALFF ±0.10 | fALFF | ReHo | ||||
MRGlu | −0.1 | 0.49 | 0.63 | MRGlu | −0.05±0.06 | 0.29± 0.05 | 0.41±0.05 | ||
MRO2 | 0.06 | 0.39 | 0.53 | MRO2 | 0.02±0.05 | 0.16± 0.04 | 0.24±0.05 | ||
BF | 0.15 | 0.36 | 0.49 | BF | 0.07±0.06 | 0.15± 0.04 | 0.23±0.05 | ||
BV | 0.29 | 0.31 | 0.37 | BV | 0.18±0.07 | 0.14± 0.06 | 0.18±0.08 | ||
(b) | Across-region Linear Correlation | (d) | Across-region Linear Correlation | ||||||
| |||||||||
ALFF | fALFF | ReHo | ALFF | fALFF | ReHo | ||||
MRGlu | 0.04 | 0.79* | 0.78* | MRGlu | −0.42±0.12 | 0.49±0.17 | 0.60 ±0.10* | ||
MRO2 | 0.29 | 0.68* | 0.54* | MRO2 | −0.08±0.15 | 0.22±0.09 | 0.29 ±0.12 | ||
BF | 0.37* | 0.68* | 0.50* | BF | −0.02± 0.21 | 0.12±0.11 | 0.20 ±0.11 | ||
BV | 0.64* | 0.68* | 0.50* | BV | 0.27±0.12 | 0.05±0.17 | −0.03±0.10 |
Table 1 (a) and (b): Spatial similarity and value correspondence on group-averaged images. Table 1 (c) and (d): Spatial similarity and value correspondence on per-subject images (mean and standard deviation). Voxel-wise cross correlation, compute by fslcc, does not output a p value. Voxel-wise cross correlation is performed on original images, to quantify spatial similarity.
P < 0.0001
Across-region correlation confirmed the metabolic correspondence of fALFF and ReHo values. fALFF and ReHo were highly correlated to MRGlu and MRO2; ALFF was correlated to BV. This pattern was quantified in group-level, across-voxel correlations, as follows (Fig. 4, Table 1, lower). ALFF and fALFF were correlated with BV (r = 0.64, 0.68; p < 0.0001); fALFF and ReHo were significantly correlated with BF (r = 0.68, 0.50), MRO2 (r = 0.68, 0.54) and MRGlu (r = 0.79, 0.78, highest) (p < 0.0001). ALFF, though correlated with ReHo and fALFF, did not show strong significant correlations with BF, MRO2, and MRGlu. For PET measurements, strong correlations of MRGlu-MRO2 and BF-MRO2 were identified in the current dataset (Supplementary Results 1.2 Table A). Spearman partial correlation, regressing out partial volume contribution of gray matter and white matter on a voxel wise basis, showed results in good agreement with the across-region results (Supplementary Results 1.2 Table D). ROI-based partial volume correction was not performed in the ROI-based analyses (illustrated in Methods 2.7 Statistical analyses).
Pearson correlations weighted for the size of the ROIs (AAL template), indicated the same pattern of association, with slightly higher correlation coefficients in BF, MRO2, and MRGlu (Supplementary 2.5 Fig. 5). Specifically, the correlation of BV versus ALFF/fALFF/ReHo was not likely to be affected by weights. Mutual information indices (MI and GCMI) across voxels further verified the association pattern, suggesting that fALFF and ReHo contained information from blood flow, oxygen, and glucose utilization. As GCMI is a normalized form of conventional Mutual Information (Ince et al., 2017a), GCMI was generally lower in values than MI.
To further investigate whether the above-reported BOLD-metabolic correspondence is consistent in per-subject findings, voxel-wise cross correlation and region-wise linear correlation across modalities were also reported in Table 1 c and d. Overall, the degree of correlation is consistent (i.e. small standard deviation of the correlation coefficient), but the strength of correlation is weak (i.e. the p value is larger, and the correlation coefficient is smaller). Only ReHo showed a similar significant association with MRGlu (p < 0.0001 after Bonferroni correction), while fALFF and ALFF showed non-significant weaker correlations with respective metrics. Additionally, the respective metabolic and hemodynamic correspondence of both z-normalized and demeaned BOLD metrics were provided in Supplementary Result 1.2 Table B and C, as these results were in good agreement with the major findings to be reported in the manuscript.
Using AAL regions sampled within the brain, conditional MI further characterized the coupled and non-coupled physiological association of rsfMRI metrics (Fig. 5). Fractional ALFF and ReHo still contained information from oxygen and glucose consumption, when neglecting the contribution of BF (Fig. 5 c, with BF as a condition, conditional MI all > 0.1 bits). On the other hand, BF-specific information was minimal when neglecting the contributions of oxygen or glucose consumption (Fig. 5 d and e, with MRO2 and MRGlu as conditions, conditional MI all < 0.03 bits). There was limited MRO2 information when neglecting the contribution of BF. This discrepancy indicates that the BF information in fALFF/ReHo was highly metabolically coupled. When neglecting MRO2-specific information, MRGlu specific information remained in the fALFF and ReHo signal (conditional MI = 0.24, 0.41 bits, respectively). After removing the MRGlu-specific information, minimal BF and MRO2 information remained in the fALFF and ReHo signal (Fig. 5 e). Mutual information and conditional mutual information are theoretically nonzero. Interaction information can be either positive, negative or zero, which is reported to be suggestive to causality besides descriptive statistics (Colenbier et al., 2020; Ghassami and Kiyavash, 2017; Nourhashemi et al., 2017; Young et al., 2021).
Interaction Information was highest with a combination of fALFF, MRO2, and MRGlu (likewise for ReHo, MRO2, and MRGlu), indicating these combined variables are synergistic (Fig. 4 right). Interactions between ReHo/fALFF, BF, and MRO2 were not as high as interactions between ReHo/fALFF, MRO2, and MRGlu, indicating that a part of BOLD-metabolic interactions was not likely to be flow coupled. Negative interaction information (Ince et al., 2017a) in ALFF indicated the non-weak association among BF, MRO2, and MRGlu. Specifically, negative but close to zero (<0.01 bits) values were identified in conditional mutual information analyses. Negative interaction information was identified between ALFF:CBF/MRO2:MRGlu (<-0.01 bits). This indicates that although mutual information ALFF:MRGlu is very close to zero, both ALFF and MRGlu are associated with CBF and MRO2.
4. Discussion
The overarching hypothesis of voxel-based BOLD-metabolic coupling was confirmed for fALFF and ReHo and disconfirmed for ALFF. CMGlu and, to a lesser degree, MRO2 provided the preponderance of metabolic information for fALFF and ReHo. Blood flow information in fALFF and ReHo were largely metabolically coupled. By contrast, ALFF was most strongly correlated with BV, having little information from MRGlu, MRO2 or BF. Regional and network-specific inter-subject correlations demonstrated that BV robustly covaried with ALFF, fALFF, and ReHo in frontoparietal and cerebellum networks across subjects. In these robust BOLD-physiology coupled regions, conditional mutual information analyses also identified non-flow-coupled metabolic information in fALFF and ReHo (Supplementary Fig. 2.6). Additionally, the blood flow information contained in fALFF and ReHo was largely metabolic coupled.
A paucity of studies have addressed the hemodynamic-metabolic correspondence of ALFF, fALFF, and ReHo. Li (Li et al., 2012b) and Aiello (Aiello et al., 2015) first reported spatial similarities of ALFF and ReHo versus blood flow and glucose metabolism, respectively, in the resting state brain. These early studies reported across-region correlations of ReHo and FDG uptake to be 0.47–0.73 (Aiello et al., 2015), 0.51–0.83 (Fu et al., 2018) and 0.68 (Bernier et al., 2017) using different temporal-filtering and ROI sampling methods. All of these prior reports are in agreement with coefficients observed in the current data (0.78). As well, significant correlations of fALFF/ReHo, BF/MRO2, MRO2/MRGlu, and BF/BV in the current dataset (Supplementary Results 1.2. Table A) indicated the reliability of respective measurements, as such coupling relations at rest have been demonstrated in an extensive literature (fALFF/ReHo (Nugent et al., 2015; Yuan et al., 2013), BF/MRO2 (Fox and Raichle, 1986), MRO2/MRGlu (Vaishnavi et al., 2010), and BF/BV (Grandin et al., 2005; Wesolowski, 2019).
For BOLD-hemodynamic association, across-region correlation of voxel-based BOLD metrics and BF, as measured with Arterial Spin Labelling MRI, was reported to be 0.41–0.49 for ALFF (Li et al., 2012b; Zou, 2015), and 0.19–0.28 for ReHo (Li et al., 2012b), while the current data showed a weaker correlation (weighted r (ALFF/BF) = 0.43 Supplementary Fig. 5; r(mALFF/BF) = 0.37, r(mReHo/BF) = 0.50, Supplementary Results 1.2 Table B). Variations of findings in the ALFF/BF association may be due to different normalization methods, accuracy of registration, underlying venous vasculature (Li et al., 2012b; Vigneau-Roy et al., 2014) and proximity to ventricles in ROI samples (Zuo et al., 2010). Also, PET calculation of BF corrects for blood volume contamination via a small-to-large vessel ratio, which limits the contribution of BV in the current ALFF/BF analyses. Indeed, some studies showed that regions with high baseline BF may not have a high fluctuation amplitude (Zou et al., 2009).
Across-voxel correlation of normalized ALFF and MRGlu is not significant in the current study, although reported as significant in other studies (Nugent et al., 2015; Tomasi et al., 2013). One prior study compared regional MRGlu to normalized ALFF and reported nonsignificant correlation in young adults (r = 0.001) (Bernier et al., 2017). Potential explanations for this disagreement are the BV correction in the MRGlu calculation, and the different frequency of filtering in the current study compared with initial reports by Tomasi and Nugent. A recent study by Jiao et al. (2019), which used multiple band-filtering methods including the band used in the current study (0.01 – 0.08 Hz), reported a weak but significant correlation between ALFF/MRGlu (r = 0.198), and moderate correlations between fALFF and ReHo versus MRGlu (r = 0.30, 0.53, respectively), which partly overlap with the current findings.
On the other hand, a significant correlation between ALFF and BV was observed. BV has been considered as a measurement of venous vasculature (Martin et al., 1987) and as a marker of microvascular density (Pathak et al., 2001). Vascular density and oxygenation in venules are found to contribute largely to the amplitude of the BOLD signal at rest, with an across-region correlation of 0.43 (Vigneau-Roy et al., 2014). This is in line with the current findings of ALFF/BV correlation, which shows stronger across-region correlation (r = 0.64, Table 1a; weighted r = 0.70, Supplementary Fig. 2.5). This association is partly concordant with the resting state findings of Kim et al. (1994) and with modeling of neurally induced oxygenation changes described by (Turner, 2002), which found that the amplitude of BOLD signals was greater along draining veins. In highly vascularized voxels, hemodynamic fluctuations, such as vasomotion and oscillation of microcirculation around 0.1 Hz (Mayhew et al., 1996; Razavi et al., 2008), may contribute to the ALFF signal (Vigneau-Roy et al., 2014). This hypothesis may explain findings in patients with glioma, where an increase of ALFF and cerebral blood volume both accompany tumor-induced neovascularization (Emblem et al., 2008; Yang et al., 2021). Also, cortical areas with higher baseline BV show a higher BOLD response at task (Davis, 1998; Vigneau-Roy et al., 2014; Yu et al., 2012).
Mutual information theory (MIT) analyses were used to inform causal inference and interactions regarding voxel-based BOLD metrics and PET hemodynamic, and metabolic metrics. A multi-collinearity relation exists among the voxel-based BOLD metrics, glucose and oxygen utilization, blood volume and blood flow at rest. In this situation, statistical inferences methods, such as partial correlation and general linear modeling, may inflate the variance of regression and mislead inferences regarding relevance (Dormann et al., 2013). Mutual information theory can supplement correlation analyses by quantifying shared information among variables including potential non-linear non-monotonic interdependencies (Song et al., 2012). MIT has been applied to quantify correlations of structural-functional image registration (Maes et al., 1997), neuron oscillatory dynamics (Schyns et al., 2011), and, more recently, functional neuroimaging data (Ince et al., 2017a). Beyond the strength of association, mutual information can estimate coupling/synergy properties between BOLD-based and PET metabolic-hemodynamic metrics, via conditional and interaction analyses (Ince et al., 2017a; Olbrich, 2015). With this measurement, the metabolic information in fALFF and ReHo signal was reconfirmed. This supports the notion that fALFF and ReHo are potentially metabolic proxies (Bernier et al., 2017).
With multi-level conditional MI analyses, the respective contributions of hemodynamic and metabolic metrics were confirmed. After removing the effect of MRGlu or MRO2, the remaining physiological information in fALFF and ReHo was minimal. This indicates that baseline BF information in fALFF and ReHo is largely attributable to underlying metabolic utilization. Jiang and Zuo (Jiang and Zuo, 2016) hypothesized that regions with high MRGlu showed enhanced ReHo due to enhanced hemodynamics, as higher glucose utilization requires higher perfusion (Huisman, 2012). The statistical inference from mutual information supports this causal inference: the fALFF/ReHo-BF association is likely to reflect inherent BOLD-metabolic coupling. Recent reports, using similar MIT measurements, show that BV and MRO2 drive baseline BF in neonatal brain in the resting state (Nourhashemi, 2020; Nourhashemi et al., 2017). These information theory findings extended early findings that different metabolic-demand conditions at rest may alter the ratio between low-amplitude BOLD and perfusion fluctuations (Fukunaga et al., 2008).
Also, conditional MI indicated that the metabolic information in voxel-based BOLD metrics was not accompanied by blood flow demand. Glucose, as a fuel of brain, is incorporated into neuronal glutamate (Shen et al., 1999) along with ongoing metabolic activities in neurons (Shen, 2013). Cerebral metabolic rate of glucose consumption is reflective of energy demand during oxidative phosphorylation of glucose, part of which covaries with metabolic rate of oxygen consumption, and glycolysis processes (Huettel et al., 2004; Magistretti et al., 1999; Raichle and Mintun, 2006). Further, glucose consumption is associated with glutamatergic synaptic activity (Shen et al., 1999) and synaptic density (Rocher et al., 2003; Stoessl, 2017). Beyond these associations, MRGlu is highly correlated with gamma-aminobutyric acid A–binding function across the whole brain (Nugent et al., 2015), potentially due to coupled GABA and glutamate activities at rest (Tremblay et al., 2013). Recent in vivo studies of glucose utilization and synaptic density further report regional variation of this association, partly because of varying levels of aerobic glycolysis and energy demand of inhibitory/excitatory synapses (van Aalst et al., 2021). Although no direct comparison of fALFF, ReHo versus glutamatergic/GABAergic function has been reported in the literature, there is evidence of an association between synaptic activity and BOLD signal at rest (Ekstrom, 2010). A supporting hypothesis is that synaptic changes will affect MRO2 (Di and Biswal, 2017). The change in synaptic activity, before and after motor training, is accompanied by baseline changes in MRO2 and MRGlu, but not in BF (Shannon et al., 2016). Therefore, the BOLD signal has great potential to map longitudinal disease-related synaptic and baseline metabolism changes (Brickman et al., 2009; Small, 2003). A recent report indicated that increased glutamate is accompanied by decreased ReHo in basal ganglia in a subtype of depression, although an exact explanation is lacking (Haroon et al., 2018). Clarification of the association between ReHo and synaptic function requires further experimentation.
In the current study, normalized MRGlu did not agree with zfALFF and zReHo in some brain regions, showing a spatial pattern consistent with another recent report by Wang (Wang, 2021). This replicable regional disagreement superimposed upon a pattern of overall concordance, may be due to the different time-scales of by PET and BOLD MRI, per Wang (Wang, 2021). As an alternative explanation, regional metabolic-balance (MR02:MRglu) variations may be in play. Although the temporal and regional linkage between neural activity and cerebral blood flow is generally considered consistent at rest (Phillips et al., 2016), metabolic-pathways preferences can differ regionally. Vaishnavi et al., 2010 reported that the MRglu:MRO2 ratio varied regionally, with some regions (e.g. medial frontal and posterior cingulate) consuming excess glucose. Comparison of BOLD-based metrics with MRglu indicated a similar pattern of (Shokri-Kojori et al., 2019). Interestingly, the same regional pattern was observed in our current data for MRGlu-fALFF/ReHo disagreement, after intensity normalization.
On the other hand, the intensity normalization applied in the current study may also change regional contrast. Although z-normalization is recommended as increasing the inter-subject reliability of BOLD metrics (Yan et al., 2013), intensity normalization may alter image texture (Carré et al., 2020) and disease-related effects (Nugent et al., 2020). Given the prevailing application of intensity normalization in both rsfMRI and PET community, further investigation is needed to determine whether the regional disagreement of normalized BOLD and MRGlu contrast is reflective of regional difference in physiology or a normalization artifact.
Given that low-pass filtering (<0.08 or 0.1 Hz) is commonly used in voxel-wised BOLD metrics analyses as a default pipeline (Yan and Zang, 2010), several studies have reported that BOLD fluctuations at frequencies below 0.1 Hz can share variances with fluctuation in cardiac/respiratory recordings (heart rate and respiratory bellows) (Birn et al., 2006; Chang et al., 2009; Chen et al., 2020; Power et al., 2017; Shmueli et al., 2007; Xifra-Porxas et al., 2021), end-tidal CO2 and arterial CO2 levels (Chang and Glover, 2009b; Lewis et al., 2020; Liu et al., 2017; Prokopiou et al., 2019), and pulse oximetry (Verstynen and Deshpande, 2011). Multiple model-based, data-driven, and hybrid noise-removal strategies are being actively developed (Beckmann et al., 2005; Behzadi et al., 2007; Birn et al., 2008; Chang and Glover, 2009a; Kasper et al., 2017; Kassinopoulos and Mitsis, 2019; Kundu et al., 2012; Power et al., 2017, 2018; Pruim et al., 2015). Although these studies are mostly focusing on inter-regional functional connectivity, non-neuronally-driven physiological confounds on voxel-wise BOLD metrics call for further investigation. Indeed, global signal regression not only has effect on inter-regional BOLD signal correlation (i.e. functional connectivity) (Murphy and Fox, 2017), but also have complex effects on voxel-wise physiological metrics (Qing et al., 2015). As an alternative to global signal regression, nuisance signal regression of motion parameters, mean white-matter and CSF time series was implemented to reduce non-neuronally driven BOLD fluctuations on the current study, in accordance with a pipeline readily available to the neuroimaging community (Yan et al., 2013; Yan and Zang, 2010). Nonetheless, the band-pass filtering and nuisance signal regression applied in the current study did not remove entirely the influence from non-neuronal systemic fluctuations. Of note, the remaining signals, although driven by hemodynamics during respiration bellows, cerebral-vascular reactivity and/or cardiac cycles, also can show regional variability that is spatially similar to specific brain networks (Bright et al., 2020; Chen et al., 2020). Additionally, a recent animal study illustrates regional variability of neurovascular-metabolic coupling between cortical and sub-cortical regions (Shaw et al., 2021). Together, filtered BOLD signals are reported to covary both with local vasculature and systematic hemodynamics, which also are considered to be informative for brain functional architecture. To improve BOLD signal quality and interpretation, more advanced casual inference strategies are needed to better link BOLD-derived metrics with the information underlying neuronal activity (Ekstrom, 2021), as explored in the current mutual information analyses.
4.1. Limitations and future directions
The current study has several limitations, as follows. The first limitation is the potential contribution of signals from large vessels. Previous studies have demonstrated the necessity of removing pixels containing large vessels for BF and BV analyses (Kudo et al., 2003). In the current study, the contribution from the large vessel is corrected via an overall threshold in the BV maps, a small-to-large vessel ratio in the BF calculation, and correction of blood volume signal in MRO2/MRGlu calculation. Using a lower threshold in the BV map could improve the correlation between BV and fALFF/ReHo, but would also eliminate true gray matter pixels. Indeed, reports which have positive ALFF/ MRGlu, and ALFF/BF correlations did not perform blood volume correction for the FDG and BF data, due to limitations of data acquisition.
Another limitation is the possible effect of partial volume correction. Earlier studies reported a considerable effect of partial volume correction on correlation coefficients (Aiello et al., 2016; Jiao et al., 2019). Specifically, Jiao et al., 2019 reported that partial volume correction on FDG images will lower the coefficient, but not the significance of findings. This result agrees with a quantitative study comparing MRGlu and rsfMRI indices using a static FDG acquisition (Aiello et al., 2016). Indeed, partial volume correction on raw PET data with MR images may influence the accuracy of kinetic modeling and produce spatially different metabolic patterns (Aiello et al., 2016; Andersen et al., 2014; Greve et al., 2016; Hitz et al., 2014). There is limited consensus on optimal correction methods for dynamic PET data (dynamic 15O and 18F data in the current study), largely due to intra-scanning head-motion and low image contrast (Bettinardi et al., 2014; Greve et al., 2016). To keep the processing pipeline consistent among different PET tracers, partial volume correction was not performed on a regional basis. There may be a potential overestimation of the correlation coefficient, but the significance of the current findings is not likely to be hindered, as indicated in other studies (Aiello et al., 2016; Jiao et al., 2019).
The influence of band filtering and normalization for voxel-based BOLD metrics on the BOLD-physiology association is not negligible. Jiao et al., 2019 demonstrates that ALFF-FDG correlation is dependent on denoising methods such as frequency band of filtering and global signal regression. In an attempt to inform the physiological interpretation of the most widely used rsfMRI metrics, the current study implemented a conventional band (0.01 – 0.08 Hz), consistent with previous quantitative studies that identified fALFF/ReHo/MRGlu correlation (Aiello et al., 2016). Also, several studies normalize the rsfMRI metrics with demeaning or z-standardization (Zuo et al., 2013), especially for ALFF, to eliminate inter-subject variation. To investigate the metabolic origin of BOLD metrics, the correlation of original rsfMRI metrics versus PET metrics is reported, with some of the normalized results in the supplementary materials. Interestingly, significant findings in across-subject comparisons are consistent in both original and normalized rsfMRI metrics, indicating that network-specific across-subject correlations are greater than the whole-brain variation in healthy subjects.
During the resting state acquisition of PET scans, subjects were in an eyes-closed condition with ongoing arterial blood sampling, sample-time recording and blood-sample counting. For rsfMRI, a similar eye-closed condition was chosen, although the alertness of the subjects during the 16 min scan was a concern. For rsfMRI, an eyes-open condition is often used, but can induced regional changes in the BOLD signal (Jao, 2013). Even with eye fixation, there is fluctuation in eye position (with attendant BOLD-signal changes) (Fransson, 2014). Given that equivalently reproducible patterns of fMRI have been described for both the eyes-closed and eyes-open conditions (Liu, 2013), the current study used eyes closed condition to keep consistent with the eyes close condition in the preponderance of PET studies. In the MRI preparation, the subjects were instructed to keep their eyes closed and not to move their body, including extremities and eyes. Before the actual acquisition of rsfMRI protocol, the subjects were notified again and asked to confirm with response. Nonetheless, level of alertness is among potential confounding factors in the current design of the resting state PET-MR study.
The sample size of the current study is small as compared with earlier studies. Some initial resting state studies reporting FDG association of ALFF have 54 subjects (Tomasi et al., 2013), 48 subjects (Liang et al., 2013a) and 26 subjects (Aiello et al., 2015). None of the prior studies, however, had all the traditional hemodynamic-metabolic variables measured in the same subject. Thus, the current dataset is unique, reporting a complete set of PET metabolic (MRGlu MRO2), hemodynamic (BF, BV) and multi-band resting-state fMRI in each subject. Also, the PET and rs-fMRI measurements were not acquired simultaneously, even though confounding metabolic variables (diet, caffeine, activity condition during scans, time of day, etc) are largely restricted.
The current study implemented mutual information analyses mainly as a descriptive tool supplementary to correlation methods, while second-level mutual information analyses can further inform causality. The contribution of global and different vessel BOLD signals to the resting-state functional connectivity can also be decomposed with conditional mutual information analyses (Colenbier et al., 2020). The causality (i.e directionality) of BV/MRO2 on BF can be inferred with transfer entropy and mutual information analyses (Nourhashemi et al., 2017). With conditional mutual information of BF in the current dataset, blood flow information in BOLD metrics was considered as a result of BOLD-metabolic correspondence, rather than an origin. Indeed, the mutual information approach for directed causality inference is being actively developed (Young et al., 2021; Varley, 2021), and is not yet validated in large-scale multi-modality neuroimaging dataset. Therefore, the current study emphasized mutual information descriptions of the multi-linear relation between BOLD metrics, brain hemodynamics and metabolism.
Finally, extension of the current work should explore the hemodynamic-metabolic correspondence of rsfMRI indices in a dynamic manner, including simultaneous acquisition using PET/MRI. Also, regional and network-specific hemodynamic-metabolic inferences regarding rsfMRI are needed for a more comprehensive and concrete physiological interpretation. In agreement with recent reports from Wang et al. (Wang, 2021), the regional disagreement of MRGlu and fALFF/ReHo, superimposing the overall BOLD-metabolic concordance, calls for further investigation. Current findings of non-flow coupled metabolic information in fALFF and ReHo needs future studies to characterize the exact relationship.
5. Conclusions
Consistent with previous studies, the current study detailed across-region correlations of static ALFF, fractional ALFF and ReHo versus voxel-based hemodynamic and metabolic variables. The current study provided strong evidence that hemodynamic features in the voxel-based BOLD signal at rest are reflective of underlying metabolic demand. Further, non-flow-coupled metabolic information in fALFF and ReHo was identified. The findings in the current study supports the notion that fALFF and ReHo can be considered as metabolic proxies.
Supplementary Material
Acknowledgements
This work was supported by awards from the United States National Institutes of Health (R01 MH084021, R01 MH-074457 and P30 AG066546). We would like to thank Research Computing Support Group at UTSA for assistance in computation resources. This work received computational support from UTSA’s HPC cluster SHAMU, operated by the Office of Information Technology. We thank Dr. Geoffrey D. Clarke for editing suggestions.
Abbreviations:
- ALFF
amplitude of low frequency fluctuations
- ReHo
regional homogeneity
- fALFF
fractional amplitude of low frequency fluctuations
- MRGlu
metabolic rate of glucose
- MRO2
metabolic rate of oxygen
- BF
blood flow
- BV
blood volume
- FDG
fluorodeoxyglucose
- MRI
magnetic resonance imaging
- PET
positron emission tomography
- rsfMRI
resting state functional magnetic resonance imaging
- BOLD
blood oxygenation level dependent
- EPI
echoplanar imaging
- MI
mutual information
- II
interaction information
- GCMI
gaussian-copula mutual information
- GM
gray matter
- WM
white matter
- F
female
- M
male
- AAL
automated anatomical labelling (atlas)
- MNI
montreal neurological institute (atlas)
- ROI
region of interest
- Ya
arterial oxygen saturation
- VBP
voxel-based physiology
Footnotes
Supplementary materials
Supplementary material associated with this article can be found, in the online version, at doi:10.1016/j.neuroimage.2022.118923.
Data and code availability statement
The data that support the findings of this study are available from the corresponding author, P.T.F, upon reasonable request. The code used in analyzing mutual information is available at a public repository, https://github.com/robince/gcmi. The toolboxes used in preprocessing (FSL) and analyzing resting state metrics (DPARSF) are available to the community at a public repository, https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/ and http://rfmri.org/DPARSF. The code used to analyze PET data is available from the corresponding author, P.T.F, upon reasonable request.
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Data Availability Statement
The data that support the findings of this study are available from the corresponding author, P.T.F, upon reasonable request. The code used in analyzing mutual information is available at a public repository, https://github.com/robince/gcmi. The toolboxes used in preprocessing (FSL) and analyzing resting state metrics (DPARSF) are available to the community at a public repository, https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/ and http://rfmri.org/DPARSF. The code used to analyze PET data is available from the corresponding author, P.T.F, upon reasonable request.