Table 3.
Maximum likelihood estimate of substitution matrix
A | T/U | C | G | |
---|---|---|---|---|
A | — | 2.74 | 2.45 | 7.34 |
T/U | 2.71 | — | 26.01 | 1.01 |
C | 2.71 | 29.11 | — | 1.01 |
G | 19.73 | 2.74 | 2.45 | — |
A: adenine, T: thymine, U: uracil, G: guanine, C: cytosine.
The bold values represent the rates of different transitional substitutions, and the italics represent the transversions substitutions.