Key resources table.
| Reagent type (species) or resource | Designation | Source or reference | Identifiers | Additional information |
|---|---|---|---|---|
| Mouse line (Mus musculus) | (B6.Cg-Tg(Slc32a1-COP4*H134R/EYFP)8Gfng/J) | The Jackson Laboratory | JAX: 014548 | A.k.a VGAT-ChR2-EYFP |
| Mouse line (Mus musculus) | IgS6tm93.1(tetO-GCaMP6f)Hze Tg(Camk2a-tTA)1Mmay/J | The Jackson Laboratory | JAX: 024108 | A.k.a. Ai93-D;CaMKIIα-tTA |
| Mouse line (Mus musculus) | B6.129S2-Emx1tm1(cre)Krj/J | The Jackson Laboratory | JAX: 005628 | A.k.a. Emx1-IRES-Cre |
| Software, algorithm | Matlab 2015b, 2016b, 2017b | Mathworks | https://www.mathworks.com/products/matlab.html | |
| Software, algorithm | ViRMEn | Aronov and Tank, 2014 | https://pni.princeton.edu/pni-software-tools/virmen | |
| Software, algorithm | NI DAQmx 9.5.1 | National Instruments | https://www.ni.com/en-us/support/downloads/drivers/download.ni-daqmx.html | |
| Software, algorithm | HCImage | Hamamatsu | https://hcimage.com | |
| Software, algorithm | Scanning laser control software | Pinto et al., 2019; Pinto, 2019 | https://github.com/BrainCOGS/laserGalvoControl | |
| Software, algorithm | Widefield data analysis software | Pinto et al., 2019; Pinto, 2020 | https://github.com/BrainCOGS/widefieldImaging | |
| Software, algorithm | Inactivation analysis | This paper, Pinto, 2022 | https://github.com/BrainCOGS/PintoEtAl2020_sub-trial_inact | |
| Software, algorithm | Python 3.8 | Python | https://www.python.org | |
| Software, algorithm | Numpy 1.18.1 | van der Walt et al., 2011 | https://www.numpy.org | |
| Software, algorithm | Scipy 1.4.1 | Virtanen et al., 2020 | https://www.scipy.org | |
| Software, algorithm | Deepdish 0.3.4 | University of Chicago, Larsson, 2022 | https://github.com/uchicago-cs/deepdish | |
| Software, algorithm | Statsmodels 0.11.0 | Skipper, 2010 | https://www.statsmodels.org | |
| Software, algorithm | Matplotlib 3.1.3 | Hunter, 2007 | https://www.matplotlib.org | |
| Software, algorithm | Pandas 1.0.1 | McKinney, 2010 | https://www.pandas.pydata.org | |
| Software, algorithm | Pingouin 0.3.8 | Vallat, 2018 | https://pingouin-stats.org | |
| Software, algorithm | Mat7.3 | Simon Kern, Kern, 2022 | https://github.com/skjerns/mat7.3 | |
| Software, algorithm | Pymer4 | Jolly, 2018 |