Table 1.
Primer sequences and amplicon sizes
| Salmonella genus and serotype identification | |||
|---|---|---|---|
| Primer | Sequence (5′→3′) | Amplicon (bp) | Reference |
| OMPC (genus) | F-ATCGCTGACTTATGCAATCG R-CGGGTTGCGTTATAGGTCTG |
204 | [7] |
| ENT (Enteritidis) | F-TGTGTTTTATCTGATGCAAGAGG R-TGAACTACGTTCGTTCTTCTGG |
304 | [7] |
| TYPH (Typhimurium) | F-TTGTTCACTTTTTACCCCTGAA R-CCCTGACAGCCGTTAGATATT |
401 | [7] |
| MAPLT subtyping | |||
| c1ST64B | F-TGTGTCGTTTGAGTGACTGCG R-TTCTAGGCTGGCTGACTGC |
548 | [13] |
| SB21ST64B | F-CTGTAT GGTTATATCGATTATCTGG R-GATTTCCTTTGCCCAGATGACG |
478 | [13, 15] |
| SB26ST64B | F-GACACCATCAATGTATGGATCGC R-AGGTTATCTATAATTCCGACCTGG |
477 | [12] |
| SB28ST64B | F-TGCAGTCAAGAGGACGTCC R-TGCCGATATGCTGATCTGGC |
589 | [12] |
| SB46ST64B | F-CATTGATGGTATCGAAGTTCGCC R-ATCTTATCGGCAGCCATACC |
401 | [13] |
| gtrAp22 | F-AGACCTTTCCGAATCCGCTG R-TAATTGCCGAGAAAGTGATAAGGG |
336 | [13] |
| gtrBp22 | F-CTTTCTCGGCAATTAGCCTG R-TTAGCCAGCACCATATCCGC |
423 | [13] |