Fig. 6. The prioritized regions of the Streptomyces QTL on chromosomes 6 and 11 overlaying previously reported data on transcript expression and genetic sweeps due to domestication.

Within each region, the log₂ ratio gene expression patterns from leaf and root materials were calculated and those with a log₂ greater than 2, as delineated by the dotted line, were further prioritized. The log₂ root transcript abundances (fragments per kilobase of exon per million mapped fragments, FPKM) are depicted by the size of the bubble. Previously reported genetic sweeps are indicated in red. a The 6.31 Mbp region on chromosome 6 position 33.99–40.3 Mbps. Abbreviations of highlighted genes: LOB - LOB domain protein 4, 2OGDD - 2-Oxoglutarate-dependent dioxygenases, FIT - FIT (Fer-like iron deficiency-induced transcription factor), Spermidine - Spermidine synthase, AD - Alcohol dehydrogenase 2, ALS - Acetolactate synthase, ACO - 1-aminocyclopropane-1-carboxylate oxidase, Polygalacturonase, AHL - AT-hook motif nuclear-localized protein, Trehalose-P - Trehalose 6-phosphate phosphatase, Aquaporin - Tonoplast intrinsic protein 23/Aquaporin, GPR TomR2 - Glycine-rich protein TomR2, P - Acid phosphatase (×3). b The 0.83 Mbp region on chromosome 11 position 53.06–54.89 Mbps. Abbreviations of highlighted genes: ABC-2 - ABC-2 type transporter, Acyl–Acyltransferase (×4), Sulfo–Sulfotransferase, ALMT- Aluminum-activated malate transporter. Source data are provided as a Source Data file.