Skip to main content
. Author manuscript; available in PMC: 2022 Dec 3.
Published in final edited form as: J Proteome Res. 2022 May 12;21(6):1382–1391. doi: 10.1021/acs.jproteome.1c00895

Figure 3: Comparison of peptides detected in quantitative data.

Figure 3:

Quantitative peptides were detected in the EncyclopeDIA search of wide-window DIA data using both a library generated from our workflow and a narrow-window calibrated Prosit predicted library. The overlap between peptides detected with both methods at a 1% FDR threshold (A) is shown along with a normalized density plot of the observed ratio of the peptides in each group between an undiluted sample and a sample diluted 50% (B). For the quantitative comparison, the expected ratio of 2 is shown as a dashed vertical line.