REAGENT or RESOURCE	SOURCE	IDENTIFIER
Deposited data
PacBio HiFi/CCS Sequel II	Wagner et al.10	SRA: SRX7083054 to SRA: SRX7083057, SRA: SRX8136474 to SRA: SRX8136477, SRA: SRX8137018 to SRA: SRX8137021
Challenge sequencing datasets		https://doi.org/10.18434/mds2-2336
Experimental models: Cell lines
Son of Ashkenazi Jewish ancestry (HG002)	NIST Office of Reference Materials; Coriell/NIGMS; PGP	NIST RM8391/RM8392; GM24385; RRID:CVCL_1C78
Father of Ashkenazi Jewish ancestry (HG003)	NIST Office of Reference Materials; Coriell/NIGMS; PGP	NIST RM8392; GM24149; RRID:CVCL_1C54
Mother of Ashkenazi Jewish ancestry (HG004)	NIST Office of Reference Materials; Coriell/NIGMS; PGP	NIST RM8392; GM24143; RRID:CVCL_1C48
Software and algorithms
hap.py		https://github.com/Illumina/hap.py
seqtk		https://github.com/lh3/seqtk
Code used to analyze challenge results and benchmarking results files	This paper	https://github.com/usnistgov/giab-pFDA-2nd-challenge https://doi.org/10.5281/zenodo.6384789
Other
Sequence data, analyses, and resources related to the NIST Genome in a Bottle Consortium samples in this manuscript	This paper	https://www.nist.gov/programs-projects/genome-bottle
GIAB stratifications used for benchmarking	This paper	https://doi.org/10.18434/mds2-2499, also available at https://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/release/genome-stratifications/v2.0/ code to generate stratifications available at https://github.com/genome-in-a-bottle/genome-stratifications/releases/tag/v2.0