Table 4.

Summary of significant SNPs from NAM analysis for SCN resistance against TN 22 (HG type 1.2.5.7) and their respective allelic effect with negative and positive effects relative to the common parent (PI 90763)

SNP ID	Chr	Allele	−log (10)P	Position	Allelic effects
					PI 90763	SA13-1385	LD11-2170	SA10-8471
ss715629539	18	T/C	58.97	1909453	−17.23	−5.20	26.60	−4.17
ss715629620	18	T/C	58.05	1957770	−16.68	−5.54	26.80	−4.58
ss715629684	18	G/T	52.99	2007638	−16.39	−5.44	26.61	−4.78
ss715610409	11	G/T	12.28	37338181	−6.87	9.04	−8.28	6.11
ss715610387	11	G/T	11.95	37237023	−6.77	8.76	−8.19	6.20
ss715610424	11	C/T	11.70	37462158	−7.47	9.46	−8.04	6.04
ss715585098	3	T/C	3.69	30809885	−3.07	6.47	−1.62	−1.78
ss715585092	3	T/C	3.66	30647053	−3.25	6.08	−0.97	−1.87
ss715585107	3	A/G	3.65	30955790	−3.05	6.43	−1.61	−1.77