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. 2022 Jan 27;42(7):1282–1293. doi: 10.1177/0271678X221077339

Table 3.

Statistically enriched biological pathways reflected by the identified 16-component biomarker cluster.

Pathway No. of biomarkers found/Total no. of biomarkers inpathway (Reactome) p-value FDR Biomarkers
Coagulation pathways
 Platelet Adhesion to exposed collagen 2/25 <0.001 <0.001 GP6;VWF
 Platelet activation, signaling and aggregation 4/264 <0.001 0.012 GP6;VWF;RARRES2;PDGFA
 Platelet degranulation 3/128 0.001 0.012 VWF;RARRES2;PDGFA
 Response to elevated plateletcytosolic Ca2+ 3/133 0.001 0.012 VWF;RARRES2;PDGFA
 Defective F8 binding to vonWillebrand factor 1/2 0.003 0.031 VWF
 Hemostasis 5/726 0.004 0.035 PLAUR;GP6;VWF;RARRES2;PDGFA
 Defective F8 cleavage by thrombin 1/3 0.004 0.038 VWF
Inflammation pathways
 TNFs bind their physiological receptors 3/30 <0.001 <0.001 TNFRSF1A;TNFRSF14;TNFRSF11B
 TNFR2 non-canonical NF-kB pathway 4/102 <0.001 <0.001 TNFRSF1A;TNFRSF14;LTBR;TNFRSF11B
Angiogenesis pathways
 Signaling by PDGF 2/60 <0.001 <0.001 SPP1;PDGFA
 Downstream signal transduction 1/31 0.001 0.012 PDGFA
ECM organization pathways
 Integrin cell surface interactions 3/85 <0.001 0.007 VWF;SPP1;HSPG2
 ECM organization 4/301 0.001 0.012 PDGFA;VWF;SPP1;HSPG2
 Non-integrin membrane-ECM interactions 2/59 0.003 0.035 PDGFA;HSPG2

FDR: false discovery rate; TNF: tumor necrosis factor; TNFR2: tumor necrosis factor receptor 2; No.: number; NF-kB: nuclear factor-kB; PDGF: Platelet-derived Growth Factor; ECM: extracellular matrix.

Data are presented as the number of biomarkers found per pathway (expressed as a fraction of the total number of biomarkers known to be involved per pathway based on the Reactome database) with corresponding p-values and FDRs. A statistically significant p-value implies that the number of biomarkers identified within a pathway is higher than would be expected by chance.