Table 3.
Pathway | No. of biomarkers found/Total no. of biomarkers inpathway (Reactome) | p-value | FDR | Biomarkers |
---|---|---|---|---|
Coagulation pathways | ||||
Platelet Adhesion to exposed collagen | 2/25 | <0.001 | <0.001 | GP6;VWF |
Platelet activation, signaling and aggregation | 4/264 | <0.001 | 0.012 | GP6;VWF;RARRES2;PDGFA |
Platelet degranulation | 3/128 | 0.001 | 0.012 | VWF;RARRES2;PDGFA |
Response to elevated plateletcytosolic Ca2+ | 3/133 | 0.001 | 0.012 | VWF;RARRES2;PDGFA |
Defective F8 binding to vonWillebrand factor | 1/2 | 0.003 | 0.031 | VWF |
Hemostasis | 5/726 | 0.004 | 0.035 | PLAUR;GP6;VWF;RARRES2;PDGFA |
Defective F8 cleavage by thrombin | 1/3 | 0.004 | 0.038 | VWF |
Inflammation pathways | ||||
TNFs bind their physiological receptors | 3/30 | <0.001 | <0.001 | TNFRSF1A;TNFRSF14;TNFRSF11B |
TNFR2 non-canonical NF-kB pathway | 4/102 | <0.001 | <0.001 | TNFRSF1A;TNFRSF14;LTBR;TNFRSF11B |
Angiogenesis pathways | ||||
Signaling by PDGF | 2/60 | <0.001 | <0.001 | SPP1;PDGFA |
Downstream signal transduction | 1/31 | 0.001 | 0.012 | PDGFA |
ECM organization pathways | ||||
Integrin cell surface interactions | 3/85 | <0.001 | 0.007 | VWF;SPP1;HSPG2 |
ECM organization | 4/301 | 0.001 | 0.012 | PDGFA;VWF;SPP1;HSPG2 |
Non-integrin membrane-ECM interactions | 2/59 | 0.003 | 0.035 | PDGFA;HSPG2 |
FDR: false discovery rate; TNF: tumor necrosis factor; TNFR2: tumor necrosis factor receptor 2; No.: number; NF-kB: nuclear factor-kB; PDGF: Platelet-derived Growth Factor; ECM: extracellular matrix.
Data are presented as the number of biomarkers found per pathway (expressed as a fraction of the total number of biomarkers known to be involved per pathway based on the Reactome database) with corresponding p-values and FDRs. A statistically significant p-value implies that the number of biomarkers identified within a pathway is higher than would be expected by chance.