TABLE 2.
Diversity statistics calculated from TRF profiles of 16S rDNAs amplified from C0, C1, S0, and S1 soil DNA
| Enzyme | Index | Diversity statisticsa
|
|||
|---|---|---|---|---|---|
| C0 | C1 | S0 | S1 | ||
| HaeIII | Sb | 21 | 19 | 18 | 14d |
| HhaI | S | 14 | 13 | 12 | 11 |
| MspI | S | 33 | 27 | 24 | 34 |
| RsaI | S | 20 | 22 | 20 | 20 |
| Avg S | 22 | 20 | 19 | 20 | |
| HaeIII | Hc | 4.13 | 3.92 | 3.74 | 3.49 |
| HhaI | H | 3.68 | 3.52 | 3.51 | 3.32 |
| MspI | H | 4.78 | 4.48 | 4.19 | 4.72 |
| RsaI | H | 3.71 | 3.74 | 3.77 | 3.72 |
| Avg H | 4.07 | 3.91 | 3.80 | 3.81 | |
C0, Cosnino interspace; C1, Cosnino rhizosphere; S0, Sunset Crater interspace; S1, Sunset Crater rhizosphere.
Phylotype richness, S, was calculated as the total number of distinct TRF sizes (between 94 and 827 bp) in a profile.
Shannon-Weiner diversity index (19) was calculated as follows: H = −Σ(pi)(log2 pi), where p is the proportion of an individual peak height relative to the sum of all peak heights.
Boldface type indicates the lowest value in each series.