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. 2000 Jul;66(7):2943–2950. doi: 10.1128/aem.66.7.2943-2950.2000

TABLE 2.

Diversity statistics calculated from TRF profiles of 16S rDNAs amplified from C0, C1, S0, and S1 soil DNA

Enzyme Index Diversity statisticsa
C0 C1 S0 S1
HaeIII Sb 21 19 18 14d
HhaI S 14 13 12 11
MspI S 33 27 24 34
RsaI S 20 22 20 20
Avg S 22 20 19 20
HaeIII Hc 4.13 3.92 3.74 3.49
HhaI H 3.68 3.52 3.51 3.32
MspI H 4.78 4.48 4.19 4.72
RsaI H 3.71 3.74 3.77 3.72
Avg H 4.07 3.91 3.80 3.81
a

C0, Cosnino interspace; C1, Cosnino rhizosphere; S0, Sunset Crater interspace; S1, Sunset Crater rhizosphere. 

b

Phylotype richness, S, was calculated as the total number of distinct TRF sizes (between 94 and 827 bp) in a profile. 

c

Shannon-Weiner diversity index (19) was calculated as follows: H = −Σ(pi)(log2 pi), where p is the proportion of an individual peak height relative to the sum of all peak heights. 

d

Boldface type indicates the lowest value in each series.