Table 2.
The number of unique barcodes in each real dataset and the percentage of SRs that they cover
| Dataset | All barcodes |
Selected barcodes |
% of SRs lost due to barcode selection | ||
|---|---|---|---|---|---|
| # of unique barcodes | % of SRs covered | # of unique barcodes | % of SRs covered | ||
| N | 1,723,938 | 97% | 10,000 | 80% | 17% |
| NOA1 | 1,063,678 | 72% | 14,000 | 55% | 17% |
| NOA2 | 859,034 | 94% | 7,000 | 85% | 9% |
Here, we compare the set of all barcodes we observe in the SRs vs the set of selected barcodes by scTagger.
Note that some SRs do not have any observed barcodes.