Table 1.
Details of hind leg muscle tissues sampled, for ATAC-Seq and RNA-Seq, from piglets at five developmental stages
Sample ID | Gilt identifier | Age in days | Muscle tissue sampled | Piglet size | ATAC-Seq | RNA-Seq |
---|---|---|---|---|---|---|
Prenatal time points | ||||||
D45L220716 | 23743 | 45 | Whole hind leg | Largest | Yes | Yes |
D45N220716 | 23743 | 45 | Whole hind leg | Average | Yes | Yes |
D45S220716 | 23743 | 45 | Whole hind leg | Smallest | Yes | Yes |
D60L120916 | 23982 | 60 | Semitendinosus | Largest | Yes | Yes |
D60N120916 | 23982 | 60 | Semitendinosus | Average | Yes | Yes |
D60S120916 | 23982 | 60 | Semitendinosus | Smallest | Yes | No |
D60S23976 | 23976 | 60 | Semitendinosus | Smallest | No | Yes |
D90L251016 | 23956 | 90 | Semitendinosus | Largest | Yes | Yes |
D90L111016 | 23964 | 90 | Semitendinosus | Largest | Yes | Yes |
D90L121016 | 23963 | 90 | Semitendinosus | Largest | Yes | Yes |
D90N251016 | 23956 | 90 | Semitendinosus | Average | Yes | Yes |
D90N111016 | 23964 | 90 | Semitendinosus | Average | Yes | Yes |
D90N031115 | 87480 | 90 | Semitendinosus | Average | Yes | Yes |
D90N121016 | 23963 | 90 | Semitendinosus | Average | Yes | Yes |
D90N231115 | 87502 | 90 | Semitendinosus | Average | Yes | Yes |
D90S231115 | 87502 | 90 | Semitendinosus | Smallest | Yes | Yes |
D90S251016 | 23956 | 90 | Semitendinosus | Smallest | Yes | Yes |
D90S111016 | 23964 | 90 | Semitendinosus | Smallest | Yes | Yes |
D90S121016 | 23963 | 90 | Semitendinosus | Smallest | Yes | No |
Age in weeks | ||||||
Postnatal time points | ||||||
1WKL100918 | 21 | 1 | Semitendinosus | Largest | Yes | Yes |
1WKS100918 | 22 | 1 | Semitendinosus | Smallest | Yes | Yes |
6WKA050219 | 6455 | 6 | Semitendinosus | Average | Yes | Yes |
6WKS050219 | 6432 | 6 | Semitendinosus | Smallest | Yes | Yes |
6WKS131218 | 6383 | 6 | Semitendinosus | Smallest | No | Yes |
6WKA131218 | 6383 | 6 | Semitendinosus | Average | No | Yes |
6WKL131218 | 6383 | 6 | Semitendinosus | Largest | No | Yes |
Cryopreserved nuclei preparations | ||||||
6WKA050219CN | 6455 | 6 | Semitendinosus | Average | Yes | No |
6WKS050219CN | 6432 | 6 | Semitendinosus | Smallest | Yes | No |