Table 2.
The frequency of ATAC-Seq peaks in each genomic feature category annotated by ChIPseeker and averaged across samples (3766 annotated peaks from a total of 4661 peaks)
Features | Frequency (% mean ± SD) |
---|---|
Promoter (1–2 kb) | 1.08 ± 0.52 |
Promoter (≤1 kb) | 50.05 ± 16.96 |
Promoter (2–3 kb) | 0.74 ± 0.28 |
5′ UTR | 4.27 ± 1.64 |
3′ UTR | 0.45 ± 0.25 |
1st exon | 2.07 ± 0.59 |
Other exon | 1.08 ± 0.32 |
1st Intron | 3.77 ± 0.78 |
Downstream (≤3 kb) | 0.23 ± 0.08 |
Distal intergenic | 34.33 ± 17.29 |