Table 1.
Structure-based virtual screening results of natural molecules from the ZINC database against the TMPRSS2 active site (top 10 hits)
| Zinc ID | Docking Score | Glide energy | Glide evdw | Glide ecoul | Glide emodel | Residue interactions | ||
|---|---|---|---|---|---|---|---|---|
| H-bond | Pi-Pi stacking | Salt bridge | ||||||
| Nafamostat | −6.075 | −25.636 | −16.027 | −9.609 | −32.630 | Asp180, Gly209 | – | Asp180 |
| ZINC000095912839 | −8.654 | −49.547 | −38.614 | −10.934 | −64.129 | Asp180, Gln183, Ser186, Gly209 | – | – |
| ZINC000085597504 | −8.538 | −55.714 | −42.66 | −13.054 | −77.883 | Gly184, Gly207, Val218 | – | – |
| ZINC000001507228 | −8.454 | −52.009 | −38.316 | −13.693 | −72.394 | Val25, His41, Gly184, Val218, Gly209 | – | – |
| ZINC000095099473 | −8.377 | −33.502 | −22.058 | −11.444 | −51.691 | His41, Gly207, Val218 | – | – |
| ZINC000059086766 | −8.062 | −51.482 | −35.828 | −15.654 | −70.321 | Val25, His41, Gly184, Gly209 | – | – |
| ZINC000000526288 | −7.864 | −52.835 | −44.701 | −8.134 | −70.813 | Val25, Gly184, Gly209 | His41 | – |
| ZINC000069482080 | −7.861 | −37.677 | −25.805 | −11.872 | −45.095 | His41, Ser186, Gly209 | – | – |
| ZINC000001532029 | −7.853 | −45.543 | −35.285 | −10.258 | − 56.79 | Gln183 | – | – |
| ZINC000000077285 | −7.696 | −34.059 | −26.096 | −7.963 | −42.861 | Ser186 | – | Asp180 |
| ZINC000000038256 | −7.666 | −49.107 | −38.728 | −10.379 | −62.49 | Gly207, Lys87 | – | – |