Table 2.
Rapidly evolving gene families in the genomes of the boxwood blight pathogens Calonectria henricotiae (Che) and C. pseudonaviculata (Cps) that contain predicted proteins with pathogen host interactions (PHI) annotations and/or putative secreted effectors
| Gene family ID | Rapidly evolving in Cps | Rapidly evolving in Che | COG category | Top Pfam target | Contains PHI annotated sequences | Contains putative secreted effectors |
|---|---|---|---|---|---|---|
| OG0000000 | (C) | S | NACHT (PF05729.13) | Yes | No | |
| OG0000003 | (C) | O | CHAT (PF12770.8) | Yes | No | |
| OG0000008 | (C) | U | Sugar transporter (PF00083.25) | Yes | No | |
| OG0000012 | (C) | Z | Phosphorylase superfamily (PF01048.21) | No | Yes | |
| OG0000013 | (C) | S | NACHT (PF05729.13) | Yes | No | |
| OG0000029 | (C) | Q | Short-chain dehydrogenase (PF00106.26) | Yes | No | |
| OG0000036 | (C) | G | Glycoside hydrolase family 18 (PF00704.29) | Yes | Yes | |
| OG0000041 | (C) | G | Carboxylesterase family (PF00135.29) | Yes | No | |
| OG0000049 | (C) | D | Protein kinase domain (PF00069.26) | Yes | No | |
| OG0000069 | (C) | U | Trichothecene efflux pump (PF06609.14) | Yes | No | |
| OG0000091 | (C) | G | LysM domain (PF01476.21) | Yes | Yes | |
| OG0000157 | (C) | Q | Amine oxidase (PF01179.21) | Yes | No | |
| OG0000187 | (C) | U | Sugar transporter (PF00083.25) | Yes | No | |
| OG0000321 | (E) | Q | AMP-binding enzyme (PF00501.29) | Yes | No | |
| OG0000702 | (C) | E | Aminotransferase class III (PF00202.22) | Yes | No | |
| OG0000852 | (C) | S | Major facilitator family (PF07690.17) | Yes | No | |
| OG0001175 | (E) | K | Fungal specific transcription factor domain (PF04082.19) | Yes | No | |
| OG0001226 | (E) | IQ | AMP-binding enzyme (PF00501.29) | Yes | No |
(C) and (E) indicate rapid contraction and expansion of each gene family, respectively