Table 3.
Ligand docking results against CviR receptors and AcGa-1 receptors.
| Compounds | Receptor of CviR | Receptor of AcGal-1 | ||||||
|---|---|---|---|---|---|---|---|---|
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| Docking value (kkal/mol) | H-Bond | Distance bond (Å) | Score | Docking value (kkal/mol) | H-Bond | Distance bond (Å) | Score | |
| Flavan-3-ol | −13.9877 | Tyr 88 Tyr 88 Ser 155 Ser 155 |
2.10 H-Don 2.10 H-Acc 2.62 H-Don 2.62 H-Acc |
98.7% 98.7% 94.0% 94.0% |
−11.9881 | His 2052 | 3.07 H-Don 3.07 H-Acc |
19.6% 19.6% |
| Naringenin | −8.8640 | Asn 77 Tyr 80 |
2.75 H-Acc 2.71 H-Acc |
62.6% 94.2% |
−10.3499 | Asn 2044 Hip 2046 |
2.91 H-Don 2.79 H-Acc |
31.7% 71.0% |
| Catechin | −13.1952 | Tyr 80 Tyr 80 Tyr 88 |
2.08 H-Don 2.08 H-Acc 2.94 H-Acc |
45.9% 45.9% 41.6% |
−12.6204 | Arg 2048 Asn 2061 |
2.50 H-Acc 2.97 H-Acc |
17.6% 11.7% |
| Quercetin | −13.3896 | Met 135 Ser 155 Ser 155 Ser 155 |
3.58 H-Don 2.75 H-Don 2.75 H-Acc 2.46 H-Acc |
21.7% 58.9% 58.9% 88.9% |
−12.3845 | Asn 2046 | 2.77 H-Acc | 37.3% |
| Hesperetin | −12.7451 | Tyr 80 Tyr 80 Tyr 88 Ser 155 |
2.07 H-Don 2.07 H-Acc 2.36 H-Acc 2.45 H-Acc |
57.0% 57.0% 100.0% 27.1% |
−12.2630 | Ser 2029 Hip 2044 Asn 2046 |
2.33 H-Acc 3.15 H-Acc 2.19 H-Acc |
98.3% 10.3% 33.7% |
| Chrysin | −12.5559 | Ser 155 | 2.62 H-Acc | 41.4% | −10.0674 | No | No | No |
| Rutin | −13.8851 | His 2052 Gly 2069 Gly 2069 Arg 2048 Asn 2061 |
2.43 H-Don 3.83 H-Don 3.21 H-Don 2.78 H-Acc 2.68 H-Acc |
72.3% 15.1% 52.1% 28.3% 14.2% |
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| Albendazole | −11.4576 | Tyr 80 Tyr 80 Tyr 80 Tyr 88 Tyr 88 |
2.97 H-Don 2.97 H-Acc 2.59 H-Acc 2.22 H-Don 2.22 H-Acc |
34.7% 34.7% 25.3% 92.3% 92.3% |
−9.3919 | Asn 2046 Hip 2044 |
2.67 H-Don 2.79 H-Acc |
15.1% 15.9% |
| Chlorolactone (native ligan of CviR) | −12.0372 | Asp 97 Tyr 80 Trp 84 |
1.59 H-Don 2.45 H-Acc 3.22 H-Acc |
72.9% 34.7% 12.4% |
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| Lactose (native ligand of AcGal-1) | −12.2641 | Asn 2046 Gly 2069 Gly 2069 Hip 2044 Arg 2048 Arg 2048 Asn 2061 Asn 2061 |
1.90 H-Don 3.52 H-Don 2.95 H-Don 2.78 H-Acc 2.65 H-Acc 2.25 H-Acc 3.35 H-Acc 1.68 H-Acc |
91.8% 38.9% 36.6% 77.3% 29.1% 44.0% 14.4% 38.3% |
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