Table 4.
Annotation of the SNPs showing marker trait association reveals role of auxin pathway genes in flower induction.
| S. no. | SNP id | Putative candidate regulators in 2 kb window of associated SNPs |
|---|---|---|
| 1. | 812678863:261: + | Transcript (TRINITY_DN34349_c0_g1_i9) annotated as cytochrome P450-like TATA box binding protein (cytochrome P450-like TBP) |
| 2. | 812679326:250: + | |
| 3. | 812678807:41: + | |
| 4. | 760222832:55: + | TRINITY_DN35027_c3_g2_i12 was annotated as putative rRNA methyltransferase |
| 5. | 785047004:88: + | TRINITY_DN34404_c4_g1_i14 an auxin response factor |
| 6. | 633271872:58: + | Genic SNP: in mRNA of pin like transcript variants |
| 7. | 593701379:271: + | TRINITY_DN32710_c2_g1_i2 annotated as F-box protein SKIP23 |
| 8. | 376936577:87: − | TRINITY_DN34296_c0_g1_i10 a serine/threonine protein phosphatase 2A |
| 9. | 834373094:36: − | GENIC SNP: ribosomal protein S2 |
| 10. | 834384838:29: − | GENIC SNP: cytochrome P450 b559 alpha subunit |
| 11. | 164755426:80: − | TRINITY_DN34186_c2_g3_i4; annotated as Cytochrome P450 89A2 |
| 12. | 35373484:284: + | TRINITY_DN33874_c0_g1_i3 annotated as U-box domain-containing protein and TRINITY_DN34453_c0_g3_i10 annotated as chromatin structure remodelling complex protein BSH |