TABLE 2.
Identification of DUS variants in neisserial genomes
| Isolate | DUS variant counta | AT-DUS count (% of content)b | AG-DUS count (% of content)b | Counts for other 6 DUSs |
% of content for other DUSsb | PubMLST ID | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| AG- mucDUS |
AG- simDUS |
AG- kingDUS |
AA- king3DUS |
AG- eikDUS |
TG- wadDUS |
||||||
| Nm512 | 1,797 | 1,456 (81.0) | 193 (10.7) | 102 | 10 | 10 | 20 | 6 | 0 | 8.3% | 71401 |
| N19-2-Y | 1,778 | 1,445 (81.3) | 189 (10.6) | 101 | 10 | 10 | 17 | 6 | 0 | 8.1% | 46123 |
| 2960 | 1,812 | 1,465 (80.8) | 190 (10.5) | 110 | 10 | 10 | 21 | 6 | 0 | 8.7% | 84080 |
| Nm040 | 1,770 | 1,429 (80.7) | 201 (11.4) | 90 | 14 | 15 | 17 | 4 | 0 | 7.9% | 58130 |
| 053442 | 1,740 | 1,426 (82.0) | 187 (10.7) | 86 | 11 | 10 | 16 | 4 | 0 | 7.3% | 12672 |
| Nei145 | 2,123 | 1,738 (81.9) | 252 (11.9) | 75 | 22 | 20 | 13 | 3 | 0 | 6.2% | 84478 |
| Nei152 | 2,125 | 1,739 (81.8) | 253 (11.9) | 75 | 22 | 20 | 13 | 3 | 0 | 6.3% | 111269 |
| Nei282 | 2,065 | 1,718 (83.2) | 236 (11.4) | 46 | 24 | 28 | 10 | 3 | 0 | 5.4% | 111270 |
| Nei341 | 2,039 | 1,712 (84.0) | 234 (11.4) | 27 | 24 | 28 | 10 | 4 | 0 | 4.6% | 83066 |
| Nei386 | 2,119 | 1,725 (81.4) | 268 (12.6) | 55 | 26 | 29 | 13 | 3 | 0 | 6.0% | 108166 |
| Nei422 | 2,115 | 1,715 (81.0) | 274 (13.0) | 55 | 26 | 29 | 13 | 3 | 0 | 6.0% | 84261 |
| Nei432 | 2,122 | 1,742 (82.1) | 248 (11.7) | 73 | 23 | 20 | 13 | 3 | 0 | 6.2% | 111271 |
| Nei439 | 2,063 | 1,711 (82.9) | 243 (11.8) | 44 | 24 | 28 | 10 | 3 | 0 | 5.3% | 111272 |
a
DUS variants: AT-DUS (5′-ATGCCGTCTGAA-3′), AG-DUS (5′-AGGCCGTCTGAA-3′), AG-mucDUS (5′-AGGTCGTCTGAA-3′), AG-simDUS (5′-AGGCTGCCTGAA-3′), AG-kingDUS (5′-AGGCAGCCTGAA-3′), AA-king3DUS (5′-AAGCAGCCTGCA-3′), AG-eikDUS (5′-AGGCTACCTGAA-3′), TG-wadDUS (5′-TGCCTGTCTGAA-3′).
b
Proportion of the DUS(s) among the total for all eight DUS variants; the percent content data shown for the six “other” DUSs represent the group of six combined.