Bacterial strains
|
Escherichia coli strain DH5α |
Vazyme |
Cat# C502-02 |
Escherichia coli strain BL21 (DE3) |
Vazyme |
Cat# C504-02 |
Escherichia coli strain DH10Bac |
Gibco |
Cat# 10361012 |
|
Chemicals, antibodies and recombinant proteins
|
Polyethylenimine (PEI) |
Polysciences |
Cat# 24885-2 |
Anti-His/APC |
Miltenyi Biotec |
Cat# 130-119-820; RRID:SCR_008984
|
FuGENE 6 Transfection Reagent |
Promega |
Cat# E2691 |
BaseMuncher endonuclease |
Abcam |
Cat# ab270049 |
SARS-CoV-2 prototype RBD protein with His-tag, spike residues 319-541 |
This paper |
accession number: EPI_ISL_402119 |
SARS-CoV-2 Alpha RBD protein with His-tag, spike residues 319-541 |
This paper |
accession number: EPI_ISL_683466 |
SARS-CoV-2 Beta RBD protein with His-tag, spike residues 319-541 |
This paper |
accession number: EPI_ISL_678615 |
SARS-CoV-2 Gamma RBD protein with His-tag, spike residues 319-541 |
This paper |
accession number: EPI_ISL_833172 |
SARS-CoV-2 Delta RBD protein with His-tag, spike residues 319-541 |
This paper |
accession number: EPI_ISL_2020954 |
SARS-CoV-2 Omicron BA.1 RBD protein with His-tag, spike residues 319-541 |
This paper |
accession number: EPI_ISL_6640916 |
SARS-CoV-2 Omicron BA.1.1 RBD protein with His-tag, spike residues 319-541 |
This paper |
accession number: EPI_ISL_ 496747 |
SARS-CoV-2 Omicron BA.2 RBD protein with His-tag, spike residues 319-541 |
This paper |
accession number: EPI_ISL_9845731 |
SARS-CoV-2 Omicron BA.3 RBD protein with His-tag, spike residues 319-541 |
This paper |
accession number: EPI_ISL_7605713 |
Human ACE2 protein, residues 19-615 |
This paper |
accession number: NP_001358344
|
|
Critical commercial assays
|
HisTrap HP 5 mL column |
GE Healthcare |
Cat# 17524802 |
Superdex 200 Increase 10/300 GL |
GE Healthcare |
Cat# 28990944 |
HiLoad 16/600 Superdex 200 pg |
GE Healthcare |
Cat# 28989335 |
Series S Sensor Chip SA |
GE Healthcare |
Cat# 29104992 |
Membrane concentrator |
Millipore |
Cat# UFC901096 |
Membrane concentrator |
Millipore |
Cat# SLHP033RB |
|
Deposited data |
|
Omicron BA.1.1 RBD/hACE2 complex (X-RAD) |
This paper |
PDB: 7XAZ
|
Omicron BA.2 RBD/hACE2 complex (X-RAD) |
This paper |
PDB: 7XB0
|
Omicron BA.3 RBD/hACE2 complex (X-RAD) |
This paper |
PDB: 7XB1
|
|
Experimental models: Cell lines |
|
HEK293F cells |
Gibco |
Cat# 11625-019 |
HEK293T cells |
ATCC |
ATCC CRL-3216 |
BHK-21 cells |
ATCC |
CCL-10 |
Sf9 cells |
Gibco |
Cat# 11496015 |
|
Recombinant DNA |
|
pEGFP-N1 |
MiaoLingPlasmid |
Cat# P0133 |
pCAGGS |
MiaoLingPlasmid |
Cat# P0165 |
pFastBac1 |
Invitrogen |
Cat# 10359-016 |
|
Software and algorithms |
|
PyMOL software |
Molecular Graphics System, Version 1.8 Schrö dinger |
https://pymol.org/2/ |
Graphpad Prism 8 |
GraphPad Software |
https://www.graphpad.com/scientific-software/prism/ |
BIAcore 8K Evaluation software |
GE Healthcare |
N/A |
FlowJo V10 |
FLOWJO |
https://www.flowjo.com/solutions/flowjo/downloads |
HKL2000 |
HKL Research |
https://www.hkl-xray.com/hkl-2000 |
COOT |
(Emsley and Cowtan, 2004) |
http://www.mrc-lmb.cam.ac.uk/personal/peemsley/coot/ |
Phenix |
(Adams et al., 2010) |
http://www.phenix-online.org/ |
MolProbity |
Duke Biochemistry |
http://molprobity.biochem.duke.edu/index.php |
GROMACS |
(Abraham et al., 2015) |
http://www.gromacs.org/ |