Antibodies |
|
Rabbit anti-GIGYF2 |
Proteintech |
Cat# 24790-1-AP; RRID:AB_2879727
|
Rabbit anti-DDX6 |
Proteintech |
Cat# 14632-1-AP; RRID:AB_2091264
|
Rabbit anti-CNOT9 |
Proteintech |
Cat# 22503-1-AP; RRID:AB_11232413
|
Rabbit anti-eIF4E2/4EHP |
Proteintech |
Cat# 12227-1-AP; RRID:AB_10642945
|
Mouse anti-GAPDH |
Proteintech |
Cat# 60004-1-Ig; RRID:AB_2107436
|
Rabbit anti-ZNF598 |
Thermo Fisher Scientific |
Cat# 703,601; RRID:AB_2815335
|
Mouse anti-Flag M2 |
Sigma-Aldrich |
Cat# F1804; RRID:AB_262044
|
Mouse anti-V5 tag |
Thermo Fisher Scientific |
Cat# R960-25; RRID:AB_2556564
|
Mouse anti-6xHis |
Thermo Fisher Scientific |
Cat# MA1-21315-HRP; RRID:AB_2536989
|
Goat anti-Rabbit IgG (H + L) Cross-Adsorbed Secondary Antibody, Alexa Fluor™ 488 |
Thermo Fisher Scientific |
Cat# A-11008; RRID:AB_143165
|
Goat anti-Mouse IgG (H + L) Cross-Adsorbed Secondary Antibody, Alexa Fluor 594 |
Thermo Fisher Scientific |
Cat# A-11005; RRID:AB_2534073
|
Sheep anti-Mouse IgG - Horseradish Peroxidase |
GE Healthcare |
Cat# NA931; RRID:AB_772210
|
Goat anti-Rabbit IgG - Peroxidase |
Sigma-Aldrich |
Cat# A6154; RRID:AB_258284
|
|
Bacterial and virus strains |
|
BL21 (DE3) Gold competent ells |
Agilent |
Cat# 230,132 |
BL21-CodonPlus (DE3) competent cells |
Agilent |
Cat# 230,245 |
DH5α competent cells |
Thermo Fisher Scientific |
Cat# 18,265,017 |
|
Chemicals, peptides, and recombinant proteins |
|
Recombinant His6-NSP2 |
This paper |
N/A |
Recombinant His6-NSP21−115
|
This paper |
N/A |
Recombinant His6-NSP2107−212
|
This paper |
N/A |
Recombinant His6-NSP2204−350
|
This paper |
N/A |
Recombinant His6-NSP2G262/265V
|
This paper |
N/A |
Recombinant GIGYF2743−1,085
|
This paper |
N/A |
Recombinant 4EHP |
This paper |
N/A |
Biotinylated isoxazole |
Sigma-Aldrich |
Cat# 900,572 |
|
Critical commercial assays |
|
Duolink In Situ Red Kit |
Sigma-Aldrich |
Cat# DUO92101 |
Dual luciferase assay |
Promega |
Cat# E1960 |
|
Experimental models: Cell lines |
|
HEK293T cells |
Sigma-Aldrich |
Cat# 12,022,001-1VL |
Flp-In T-REx HEK293 cells |
Thermo Fisher Scientific |
Cat# R78007
|
4EHPKO Flp-In T-REx HEK293 cells |
(Jafarnejad et al., 2018) |
N/A |
GIGYF2KO Flp-In T-REx HEK293 cells |
This paper |
N/A |
|
Recombinant DNA |
|
Plasmid: pFRT/TO/FLAG/HA-DEST TNRC6C |
(Landthaler et al., 2008) |
Addgene plasmid #19885 |
Plasmid: pcDNA5-FRT-TO-FH-NSP2 |
David Tollervey (Unpublished) |
Addgene plasmid #157683 |
Plasmid: pcDNA5-FRT-TO-FH-NSP2 G262V/G265V |
This paper |
N/A |
Plasmid: pcDNA5-FRT-TO-FH-NSP21−212
|
This paper |
N/A |
Plasmid: pcDNA5-FRT-TO-FH-NSP21−350
|
This paper |
N/A |
Plasmid: pcDNA5-FRT-TO-FH-NSP21−509
|
This paper |
N/A |
Plasmid: pcDNA5-FRT-TO-FH-NSP2107−638
|
This paper |
N/A |
Plasmid: pcDNA5-FRT-TO-FH-NSP2204−638
|
This paper |
N/A |
Plasmid: pcDNA5-FRT-TO-FH-NSP2340−638
|
This paper |
N/A |
Plasmid: pSpCas9(BB)-2A-Puro |
(Ran et al., 2013) |
Addgene plasmid #62988 |
Plasmid: pSpCas9(BB)-2A-Puro-Gigyf2-sgRNA |
This paper |
N/A |
Plasmid: pET28-His6-ZZ |
(Barbarin-Bocahu and Graille, 2022) |
N/A |
Plasmid: pET28-His6-ZZ-NSP2 |
This paper |
N/A |
Plasmid: pET28-His6-ZZ-NSP2 G262V/G265V |
This paper |
N/A |
Plasmid: pET28-His6-ZZ-NSP21−115
|
This paper |
N/A |
Plasmid: pET28-His6-ZZ-NSP2107−212
|
This paper |
N/A |
Plasmid: pET28-His6-ZZ-NSP2204−350
|
This paper |
N/A |
Plasmid: pCI-Neo |
Promega |
Cat# E1841 |
Plasmid: pCI-Neo-V5-GIGYF2 |
This paper |
N/A |
Plasmid: pCI-Neo-V5-GIGYF21−267
|
This paper |
N/A |
Plasmid: pCI-Neo-V5-GIGYF2258−495
|
This paper |
N/A |
Plasmid: pCI-Neo-V5-GIGYF2486−752
|
This paper |
N/A |
Plasmid: pCI-Neo-V5-GIGYF2743−1,085
|
This paper |
N/A |
Plasmid: pCI-Neo-V5-GIGYF21,076-1,320
|
This paper |
N/A |
Plasmid: pCI-Neo-V5-4EHP |
This paper |
N/A |
Plasmid: pCI-Neo-V5-4EHP W95A |
This paper |
N/A |
Plasmid: pGEX-6P-1 |
Amersham |
Cat# 27-4597-01 |
Plasmid: pGEX-6P-1-4EHP |
This paper |
N/A |
Plasmid: pGEX-6P-1-GIGYF2743−1,085
|
This paper |
N/A |
Plasmid: pCI-Neo-λNV5-GIGYF2 |
This paper |
N/A |
Plasmid: pCI-Neo-λNV5-GW182SD
|
This paper |
N/A |
Plasmid: pCI-Neo-λNV5-GW182SD ΔPPGL |
This paper |
N/A |
Plasmid: psiCHECK-2 |
Promega |
Cat# C802A |
Plasmid: psiCHECK-2-Ifnb1 3′ UTR |
(Zhang et al., 2021) |
N/A |
Plasmid: pCI-Neo-RLuc-5BoxB-A114-N40-HhR |
(Chapat et al., 2017b) |
N/A |
Plasmid: pCI-Neo-RLuc-5BoxB |
(Pillai et al., 2004) |
N/A |
Plasmid: pCI-Neo-RLuc-6let7a |
(Pillai et al., 2004) |
N/A |
Plasmid: pCI- Neo-FLuc |
(Pillai et al., 2004) |
N/A |
|
Software and algorithms |
|
Fiji |
Fiji |
RRID: SCR_002285
|
Prism 9 |
GraphPad |
RRID:SCR_002798
|
Illustrator CS6 |
Adobe |
RRID:SCR_010279
|
ChimeraX |
UCSF |
RRID:SCR_015872
|
Image Lab Software |
Bio-Rad |
RRID:SCR_014210
|
Jalview |
Jalview |
RRID:SCR_006459
|