TABLE 1.
Summary of gene/element feature of Garra dengba (GD), Garra tibetana (GT) and Garra yajiangensis (GY).
| Gene | Poistion start | Poistion end | Size (bp) | Intervening spacer (bp)* | Start codon | Stop codon | Strand |
|---|---|---|---|---|---|---|---|
| GT/GD/GY | |||||||
| tRNA-Phe | 1/1/1 | 69/68/69 | 69/68/69 | 0/0/0 | H | ||
| 12S rRNA | 70/69/70 | 1021/1019/1019 | 952/951/950 | 0/0/0 | H | ||
| tRNA-Val | 1021/1020/1020 | 1092/1091/1091 | 72/72/72 | 0/0/0 | H | ||
| 16S rRNA | 1093/1092/1092 | 2780/2779/2778 | 1688/1688/1687 | 0/0/0 | H | ||
| tRNA-Leu | 2781/2780/2779 | 2856/2855/2854 | 76/76/76 | 0/1/1 | H | ||
| ND1 | 2857/2857/2856 | 3831/3831/3830 | 975/975/975 | 3/4/4 | ATG/ATG/ATG | TAA/TAA/TAA | H |
| tRNA-Ile | 3835/3836/3835 | 3906/3907/3906 | 72/72/72 | −2/−2/−2 | H | ||
| tRNA-Gln | 3905/3906/3905 | 3975/3976/3975 | 71/71/71 | 1/1/1 | L | ||
| tRNA-Met | 3977/3978/3977 | 4045/4046/4045 | 69/69/69 | 0/0/0 | H | ||
| ND2 | 4046/4047/4046 | 5092/5091/5092 | 1047/1045/1047 | −2/0/−2 | ATG/ATG/ATG | TAG/T--/TAG | H |
| tRNA-Trp | 5091/5092/5091 | 5161/5162/5161 | 71/71/71 | 2/2/2 | H | ||
| tRNA-Ala | 5164/5165/5164 | 5232/5233/5231 | 69/69/68 | 1/1/1 | L | ||
| tRNA-Asn | 5234/5235/5233 | 5306/5307/5305 | 73/73/73 | 0/0/0 | L | ||
| OL | 5307/5306/5306 | 5340/5341/5338 | 34/34/33 | 0/0/0 | H | ||
| tRNA-Cys | 5341/5342/5339 | 5406/5409/5405 | 66/68/67 | 1/1/1 | L | ||
| tRNA-Tyr | 5408/5411/5407 | 5478/5481/5477 | 71/71/71 | 1/1/1 | L | ||
| COI | 5480/5483/5479 | 7030/7033/7029 | 1551/1551/1551 | 0/1/0 | GTG/GTG/GTG | TAA/TAA/TAA | H |
| tRNA-Ser | 7031/7035/7030 | 7101/7103/7100 | 71/69/71 | 3/4/3 | L | ||
| tRNA-Asp | 7105/7108/7104 | 7174/7177/7174 | 70/70/71 | 13/12/12 | H | ||
| COII | 7188/7190/7187 | 7878/7880/7877 | 691/691/691 | 0/0/0 | ATG/ATG/ATG | T--/T--/T-- | H |
| tRNA-Lys | 7879/7881/7878 | 7954/7956/7953 | 76/76/76 | 1/1/1 | H | ||
| ATP8 | 7956/7958/7955 | 8120/8122/8119 | 165/165/165 | −7/−7/−7 | ATG/ATG/ATG | TAG/TAA/TAG | H |
| ATP6 | 8114/8116/8113 | 8797/8799/8796 | 684/684/684 | −1/−1/−1 | ATG/ATG/ATG | TAA/TAA/TAA | H |
| COIII | 8797/8799/8796 | 9582/9583/9581 | 786/785/786 | −1/0/−1 | ATG/ATG/ATG | TAA/TA-/TAA | H |
| tRNA-Gly | 9582/9584/9581 | 9653/9654/9652 | 72/71/72 | 0/0/0 | H | ||
| ND3 | 9654/9655/9653 | 10004/10003/10001 | 351/349/349 | −2/0/0 | ATG/ATG/ATG | TAG/T--/T-- | H |
| tRNA-Arg | 10003/10004/10002 | 10072/10073/10071 | 70/70/70 | 0/0/0 | H | ||
| ND4L | 10073/10074/10072 | 10369/10370/10368 | 297/297/297 | −7/−7/−7 | ATG/ATG/ATG | TAA/TAA/TAA | H |
| ND4 | 10363/10364/10362 | 11743/11744/11742 | 1381/1381/1381 | −2/0/0 | ATG/ATG/ATG | T--/T--/T-- | H |
| tRNA-His | 11744/11745/11743 | 11812/11814/11811 | 69/70/69 | 0/0/0 | H | ||
| tRNA-Ser | 11813/11815/11812 | 11881/11883/11879 | 69/69/68 | 1/1/1 | H | ||
| tRNA-Leu | 11883/11885/11881 | 11955/11957/11953 | 73/73/73 | 3/3/3 | H | ||
| ND5 | 11959/11961/11957 | 13782/13784/13780 | 1824/1824/1824 | −3/−4/−4 | ATA/ATA/ATA | TAA/TAA/TAA | H |
| ND6 | 13780/13781/13777 | 14300/14302/14298 | 521/522/522 | 0/0/0 | ATG/ATG/ATG | TA-/TAA/TAG | L |
| tRNA-Glu | 14301/14303/14299 | 14369/14371/14367 | 69/69/69 | 4/5/5 | L | ||
| Cytb | 14374/14377/14373 | 15514/15517/15509 | 1141/1141/1137 | 0/0/4 | ATG/ATG/ATG | T--/T--/TAA | H |
| tRNA-Thr | 15515/15518/15514 | 15586/15589/15585 | 72/72/72 | 0/0/0 | H | ||
| D-Loop1 | 15587/15590/15586 | 16524/16490/16499 | 938/901/914 | 0/0/0 | H | ||
| tRNA-Pro | 16525/16491/16500 | 16594/16560/16568 | 70/70/79 | 0/0/0 | L | ||
| D-Loop2 | 16595/16561/16569 | 16876/16861/16835 | 282/301/267 | 0/0/0 | H | ||