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. 2022 Jun 8;10:892093. doi: 10.3389/fchem.2022.892093

TABLE 1.

Comprehensive detail of intermolecular interaction of interfacial residues of RDB of WT, Delta, and Omicron with human ACE2 receptor.

Complex RDB residue ACE2 residue Bond type Distance (Å) Occupancy (%)
WT RDB-ACE2 K417 D30 Salt bridge 3.05 85
G446 Q42 Hydrogen bond 2.92 79
Y449 D38 Hydrogen bond 1.75 80
Y449 Q42 Hydrogen bond 3.57 85
N487 Q24 Hydrogen bond 3.13 90
N487 Y83 Hydrogen bond 2.18 94
Y489 Y83 - - -
Q493 E35 Hydrogen bond 2.53 51
T500 Y41 Hydrogen bond 2.57 59
N501 Y41 Hydrogen bond 3.24 85
G502 K353 Hydrogen bond 1.99 78
Y505 E37 Hydrogen bond 1.75 50
Y505 R393 Hydrogen bond 3.02 73
Delta RDB-ACE2 K417 D30 Salt bridge 3.22 91
G446 Q42 - - -
Y449 D38 Hydrogen bond 2.84 88
Y449 Q42 - - -
N487 Q24 Hydrogen bond 3.61 68
N487 Y83 Hydrogen bond 3.27 70
Y489 Y83 Hydrogen bond 3.70 65
Q493 E35 Hydrogen bond 2.96 44
T500 Y41 Hydrogen bond 3.56 62
N501 Y41 Hydrogen bond 1.94 89
G502 K353 Hydrogen bond 3.22 85
Y505 E37 Hydrogen bond 2.12 81
Y505 R393 Hydrogen bond 3.11 82
Omicron RBD-ACE2 N417 D30 - - -
S446 Q42 - - -
Y449 D38 Hydrogen bond 1.93 70
Y449 Q42 Hydrogen bond 2.92 77
N487 Q24 Hydrogen bond 2.34 82
N487 Y83 Hydrogen bond 2.76 80
Y489 Y83 Hydrogen bond 2.53 75
R493 E35 Hydrogen bond 2.66 83
T500 Y41 Hydrogen bond 2.25 62
Y501 Y41 π-π 3.52 85
G502 K353 Hydrogen bond 2.97 76
H505 E37 Hydrogen bond 1.82 95
H505 R393 Hydrogen bond 3.22 98