TABLE 1.
Comprehensive detail of intermolecular interaction of interfacial residues of RDB of WT, Delta, and Omicron with human ACE2 receptor.
| Complex | RDB residue | ACE2 residue | Bond type | Distance (Å) | Occupancy (%) |
|---|---|---|---|---|---|
| WT RDB-ACE2 | K417 | D30 | Salt bridge | 3.05 | 85 |
| G446 | Q42 | Hydrogen bond | 2.92 | 79 | |
| Y449 | D38 | Hydrogen bond | 1.75 | 80 | |
| Y449 | Q42 | Hydrogen bond | 3.57 | 85 | |
| N487 | Q24 | Hydrogen bond | 3.13 | 90 | |
| N487 | Y83 | Hydrogen bond | 2.18 | 94 | |
| Y489 | Y83 | - | - | - | |
| Q493 | E35 | Hydrogen bond | 2.53 | 51 | |
| T500 | Y41 | Hydrogen bond | 2.57 | 59 | |
| N501 | Y41 | Hydrogen bond | 3.24 | 85 | |
| G502 | K353 | Hydrogen bond | 1.99 | 78 | |
| Y505 | E37 | Hydrogen bond | 1.75 | 50 | |
| Y505 | R393 | Hydrogen bond | 3.02 | 73 | |
| Delta RDB-ACE2 | K417 | D30 | Salt bridge | 3.22 | 91 |
| G446 | Q42 | - | - | - | |
| Y449 | D38 | Hydrogen bond | 2.84 | 88 | |
| Y449 | Q42 | - | - | - | |
| N487 | Q24 | Hydrogen bond | 3.61 | 68 | |
| N487 | Y83 | Hydrogen bond | 3.27 | 70 | |
| Y489 | Y83 | Hydrogen bond | 3.70 | 65 | |
| Q493 | E35 | Hydrogen bond | 2.96 | 44 | |
| T500 | Y41 | Hydrogen bond | 3.56 | 62 | |
| N501 | Y41 | Hydrogen bond | 1.94 | 89 | |
| G502 | K353 | Hydrogen bond | 3.22 | 85 | |
| Y505 | E37 | Hydrogen bond | 2.12 | 81 | |
| Y505 | R393 | Hydrogen bond | 3.11 | 82 | |
| Omicron RBD-ACE2 | N417 | D30 | - | - | - |
| S446 | Q42 | - | - | - | |
| Y449 | D38 | Hydrogen bond | 1.93 | 70 | |
| Y449 | Q42 | Hydrogen bond | 2.92 | 77 | |
| N487 | Q24 | Hydrogen bond | 2.34 | 82 | |
| N487 | Y83 | Hydrogen bond | 2.76 | 80 | |
| Y489 | Y83 | Hydrogen bond | 2.53 | 75 | |
| R493 | E35 | Hydrogen bond | 2.66 | 83 | |
| T500 | Y41 | Hydrogen bond | 2.25 | 62 | |
| Y501 | Y41 | π-π | 3.52 | 85 | |
| G502 | K353 | Hydrogen bond | 2.97 | 76 | |
| H505 | E37 | Hydrogen bond | 1.82 | 95 | |
| H505 | R393 | Hydrogen bond | 3.22 | 98 |