Fig. 2.

Example use of PlantNexus for a single gene as input. (A) Two search modes are available, ‘single gene’ and ‘multiple genes’. (B) The search results and data loaded through user interactions are organized in button trees. By clicking these buttons, users can switch the display of different results on the same web page. (C) An example data table for a single gene. For each gene, the average expression (box plots) and percent of data sets that express it (pie plots) are visualized. By clicking the corresponding buttons from this page, users can view the co-expression network (D), co-expressed genes (E) and expression plot (F). The network viewer allows users to export the networks, change node and edge color individually or in batches, load selected node (as a gene data table) and edge (as an expression plot), annotate the node and filter the network by various mutual rank cutoffs. The expression plot allows users to filter the plot by tissue types.