Table 2.
A description of existing antimicrobial-specific databases
| Specific Statistics | ||||||
|---|---|---|---|---|---|---|
| Database | Type of AMPs | Size | Type of Database | Type of Data | Years | Web site |
| BaAMPs | Anti-biofilm peptides | ∼237 | Exp. Primary | Natural BaAMPs | 2015 | http://baamps.it/ |
| CancerPPD | Anticancer peptides | ∼3490 | Exp. and Pred. Secondary | Natural, and Predicted ACPs | 2015 | http://crdd.osdd.net/raghava/cancerppd/ |
| ParaPep | Antiparasitic peptides | ∼860 | Exp. and Pred. Secondary | Natural, and Predicted APPs | 2014 | http://webs.iiitd.edu.in/raghava/parapep/peptide.php |
| YADAMP | Antibacterial peptides | ∼2525 | Exp. and Pred. Secondary | Natural, and Predicted ABPs | 2012 | http://yadamp.unisa.it/ |
| DADP | Amphibian peptides | ∼2570 | Exp. Primary | Natural | 2012 | http://split4.pmfst.hr/dadp/ |
| THIOBASE | Bacterial thiopeptides | ∼100 | Exp. and Pred. Secondary | Natural, and Predicted thiopeptides | 2012 | http://db-mml.sjtu.edu.cn/THIOBASE/ |
| BACTIBASE | Bacteriocins | ∼177 | Exp. and Pred. Secondary | Natural, and Predicted ABPs | 2010 | http://bactibase.hammamilab.org/main.php |
| Cybase | Cyclotides | ∼1270 | Exp. and Pred. Secondary | Natural, and Predicted AMPs | 2008 | http://www.cybase.org.au/ |
| Defensins Knowledgebase | Defensins | ∼300 | Exp. and Pred. Secondary | Natural AMPs | 2007 | http://defensins.bii.a-star.edu.sg/ |
| peptaibol | Peptaibols | ∼317 | Exp. Primary | Natural AMPs | 2004 | http://peptaibol.cryst.bbk.ac.uk/home.shtml |
BaAMPs: Biofilm-active AMPs database; ParaPep: Parasites Peptides; YADAMP: Yet another database of antimicrobial peptides; DADP: Database of anuran defense peptides; THIOBASE: A Database of Thiopeptides Featured in Genetics and Chemistry; BACTIBASE: A database dedicated to bacteriocins; Cybase: Cyclic protein database; Defensins: A manual database on the defensins family of antimicrobial peptides; Peptaibol: A database for sequences and structures of naturally occurring peptaibols.