Table 1.
Statistics of variants obtained from analysis of exome sequencing samples from paired and orphan tumors following depletion of germline variants with the global population variation databases (gnomAD, dbSNP) and Asian/Indian (GenomeAsia, IndiGenomes, TMC-SNPdb 2.0) population germline variant databases, along with variants from the PON derived from 173 in-house normal exome samples
| Unique variants retained upon depletion with databases | |||||
|---|---|---|---|---|---|
| Unique variants | gnomAD + dbSNP | Indian/Asian ethnic-specific databases | Per tumor median % reduction by Indian/Asian databases post dbSNP + GnomAD depletion | Total variants depleted by Indian/Asian databases post dbSNP + GnomAD depletion | |
| Paired Tumor-Normal Samples (n = 180) | 360 352 | 119 608 | 117 029 | 2.27 | 2579 |
| Orphan samples (n = 44) | 378 995 | 88 089 | 86 729 | 3.18 | 1360 |