Table 2.
Data comparison of FibROAD with similar web-based resources
| FibROAD | Fibromine | IPF Cell Atlas | PulmonDB | TiRe | ||
|---|---|---|---|---|---|---|
| Organs | Total count | 17 | 1 | 1 | 2 | 2 |
| Type | lung, liver, skin, kidney, heart, blood, muscle, intestine, blood vessel, bone marrow, eye, pancreas, oral cavity, gall bladder, spleen, respiratory tract, tendon | lung | lung | lung, blood | lung, skin | |
| Datasets | Total counts | 233 | 110 | 6 | 79 | N.A. |
| Omics types | 7 | 4 | 1 | 2 | N.A. | |
| RNA-seq | 169 | 15 | 0 | 4 | N.A. | |
| scRNA-seq | 40 | 16 | 6 | 0 | N.A. | |
| miRNA-seq | 11 | 0 | 0 | 0 | N.A. | |
| ChIP-seq | 6 | 0 | 0 | 0 | N.A. | |
| ATAC-seq | 3 | 0 | 0 | 0 | N.A. | |
| MeDIP-seq | 2 | 0 | 0 | 0 | N.A. | |
| MBD-seq | 2 | 0 | 0 | 0 | N.A. | |
| Array | 0 | 70 | 0 | 75 | N.A. | |
| Proteomics | 0 | 9 | 0 | 0 | N.A. | |
| Species | Total count | 5 | 2 | 1 | 1 | 4 |
| Type | Homo sapiens, Mus musculus, Rattus norvegicus, Sus scrofa, Acomys cahirinus |
Homo sapiens, Mus musculus |
Homo sapiens | Homo sapiens | Homo sapiens, Mus musculus, Rattus norvegicus, Sus scrofa |
|
| FRGs | Gene counts (N.R.) | 232 | N.A. | N.A. | N.A. | 498 |
| Reference counts (N.R.) | 909 | N.A. | N.A. | N.A. | 607 | |
| Organs (Ref.) | lung (172), liver (217), skin (37), kidney (156), heart (187), othersa (159) | N.A. | N.A. | N.A. | lung (196), skin (411) | |
Abbreviations: N.A.—not available; N.R.—non-redundant; Ref.—reference counts; FRGs—fibrosis-related genes; a—details can be found online at FibROAD.