Table 2.

Examples of tools for sample identification in public repositories

Automatic text mining tools
Zooma/OntoCat	http://www.ebi.ac.uk/spot/zooma/
Expression signature-based classifier tools
GEMENI	http://genomics.wpi.edu/gemini/
SPIED3	http://www.spied.org.uk/cgi-bin/HGNC-SPIED3.1.cgi
ProfileChaser	http://profilechaser.ucsf.edu/
ExpressionBlast	http://www.expression.cs.cmu.edu/
SEEK	http://seek.princeton.edu
Crowdsourcing tools
Search Tag Analyze Resource	http://stargeo.org/
CREEDS	http://amp.pharm.mssm.edu/creeds/
ADEPTUS	http://acgt.cs.tau.ac.il/adeptus/

Selection of tools that can be used to identify relevant samples in public repositories.